RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LIM2P55344 173 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 C21orf58P58505 322 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 MAT1AQ00266 395 aaKnown RBP23.75■■□□□ 1.39
SHMT1-207ENST00000580002 STX5Q13190 355 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 SYT16Q17RD7 645 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 MIEF2Q96C03 454 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 SERINC2Q96SA4 455 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 INPP5KQ9BT40 448 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 SLC6A13Q9NSD5 602 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 SIDT1Q9NXL6 827 aaKnown RBP23.75■■□□□ 1.39
SHMT1-207ENST00000580002 WDFY3Q8IZQ1 3526 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 ANGPT2O15123 496 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 PROM1O43490 865 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 AIFM1O95831 613 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 C1QCP02747 245 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 PTPN4P29074 926 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 INSM1Q01101 510 aaPredicted RBP23.75■■□□□ 1.39
SHMT1-207ENST00000580002 PDE7AQ13946 482 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 TCTE1Q5JU00 501 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 SLCO6A1Q86UG4 719 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 GPR180Q86V85 440 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 CLECL1Q8IZS7 167 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 DSELQ8IZU8 1212 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 TMEM52Q8NDY8 209 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 ZDHHC19Q8WVZ1 309 aaPredicted RBP23.75■■□□□ 1.39
SHMT1-207ENST00000580002 COQ8BQ96D53 544 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 CDC6Q99741 560 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 PACSIN3Q9UKS6 424 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 MAU2Q9Y6X3 613 aa23.75■■□□□ 1.39
SHMT1-207ENST00000580002 ZNF749O43361 778 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 B3GALT2O43825 422 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 PRMT3O60678 531 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 ATP5HO75947 161 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 IL6P05231 212 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 CCL4P13236 92 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 TSFMP43897 325 aaKnown RBP23.74■■□□□ 1.39
SHMT1-207ENST00000580002 GCGRP47871 477 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 HNRNPFP52597 415 aaKnown RBP23.74■■□□□ 1.39
SHMT1-207ENST00000580002 ITGA1P56199 1179 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 NHLH1Q02575 133 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 CAPRIN1Q14444 709 aaKnown RBP23.74■■□□□ 1.39
SHMT1-207ENST00000580002 TRIP6Q15654 476 aaKnown RBP23.74■■□□□ 1.39
SHMT1-207ENST00000580002 ZNF750Q32MQ0 723 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 CPTPQ5TA50 214 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 TTLL10Q6ZVT0 673 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 CA13Q8N1Q1 262 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 GTF2H4Q92759 462 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 CTRCQ99895 268 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 BTBD10Q9BSF8 475 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 EFCAB1Q9HAE3 211 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 ANKHQ9HCJ1 492 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 SERHLQ9NQF3 203 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 CUTCQ9NTM9 273 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 TMEM45AQ9NWC5 275 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 HCN3Q9P1Z3 774 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 DAPP1Q9UN19 280 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 SCN2AQ99250 2005 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 GVINP1Q7Z2Y8 2422 aa23.74■■□□□ 1.39
SHMT1-207ENST00000580002 KIF26BQ2KJY2 2108 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 TXNDC9O14530 226 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 RFPL3O75679 317 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 DDCP20711 480 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 ALAS2P22557 587 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 HPCAL1P37235 193 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 CDKN2CP42773 168 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 KCNJ2P63252 427 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 GRM7Q14831 915 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 FAM9CQ8IZT9 166 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 FAM47BQ8NA70 645 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 TSPEARQ8WU66 669 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 DUSP26Q9BV47 211 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 CADM1Q9BY67 442 aaKnown RBP23.73■■□□□ 1.39
SHMT1-207ENST00000580002 SERTAD3Q9UJW9 196 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 PMS2P1A4D2B8 440 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 EFCAB7A8K855 629 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 CFLARO15519 480 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 KIR3DL1P43629 444 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 TRA2BP62995 288 aaKnown RBP23.73■■□□□ 1.39
SHMT1-207ENST00000580002 CLPPQ16740 277 aaPredicted RBP23.73■■□□□ 1.39
SHMT1-207ENST00000580002 GTDC1Q4AE62 458 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 DHRS13Q6UX07 377 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 IKBIPQ70UQ0 350 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 PMEPA1Q969W9 287 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 EXOSC8Q96B26 276 aaKnown RBP23.73■■□□□ 1.39
SHMT1-207ENST00000580002 PPCDCQ96CD2 204 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 KLHL29Q96CT2 875 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 SLAMF7Q9NQ25 335 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 LEF1Q9UJU2 399 aaPredicted RBP23.73■■□□□ 1.39
SHMT1-207ENST00000580002 PCDHA9Q9Y5H5 950 aa23.73■■□□□ 1.39
SHMT1-207ENST00000580002 CROCCQ5TZA2 2017 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 MYOCOSA0A1B0GUC4 107 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 FXYD1O00168 92 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 CHST10O43529 356 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 GSNP06396 782 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 MSL3P1P0C860 447 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 PTGER1P34995 402 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 OR1D4P47884 311 aa23.72■■□□□ 1.39
SHMT1-207ENST00000580002 SIM1P81133 766 aaPredicted RBP23.72■■□□□ 1.39
SHMT1-207ENST00000580002 SRSF11Q05519 484 aaKnown RBP23.72■■□□□ 1.39
SHMT1-207ENST00000580002 ART3Q13508 389 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms