RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 OR9A4Q8NGU2 314 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 WDR36Q8NI36 951 aaKnown RBP10.17□□□□□ -0.78
SS18-213ENST00000579640 RP9Q8TA86 221 aaKnown RBP10.17□□□□□ -0.78
SS18-213ENST00000579640 MMABQ96EY8 250 aaPredicted RBP10.17□□□□□ -0.78
SS18-213ENST00000579640 EGLN2Q96KS0 407 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 SLC25A23Q9BV35 468 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 WDR41Q9HAD4 459 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 SLC39A1Q9NY26 324 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 EHD3Q9NZN3 535 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 ATP6V1HQ9UI12 483 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 FBXW2Q9UKT8 454 aa10.17□□□□□ -0.78
SS18-213ENST00000579640 C1orf226A1L170 272 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 SGK494L7N484 410 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 SCAMP2O15127 329 aaKnown RBP10.16□□□□□ -0.78
SS18-213ENST00000579640 PROM1O43490 865 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 HYAL3O43820 417 aaPredicted RBP10.16□□□□□ -0.78
SS18-213ENST00000579640 CPNE3O75131 537 aaKnown RBP10.16□□□□□ -0.78
SS18-213ENST00000579640 RDH16O75452 317 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 MED26O95402 600 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 B3GALT4O96024 378 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 IL6P05231 212 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 SNRPB2P08579 225 aaKnown RBP10.16□□□□□ -0.78
SS18-213ENST00000579640 JMJD7P0C870 316 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 CCL4P13236 92 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 COX7A2P14406 83 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 ALAS2P22557 587 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 CPN2P22792 545 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 HNRNPH2P55795 449 aaKnown RBP10.16□□□□□ -0.78
SS18-213ENST00000579640 RAB38P57729 211 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 SNRPNP63162 240 aaKnown RBP10.16□□□□□ -0.78
SS18-213ENST00000579640 TNFRSF17Q02223 184 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 PDE7AQ13946 482 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 RUNX2Q13950 521 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 RCAN2Q14206 197 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 DCAF12Q5T6F0 453 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 NDUFAF5Q5TEU4 345 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 PWWP2BQ6NUJ5 590 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 CAMKMTQ7Z624 323 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 TREML1Q86YW5 311 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 FUNDC1Q8IVP5 155 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 GALNT15Q8N3T1 639 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 KRTCAP2Q8N6L1 136 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 EFCAB3Q8N7B9 438 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 ADAMTS14Q8WXS8 1223 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 TEX37Q96LM6 180 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 LRFN5Q96NI6 719 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 TAAR9Q96RI9 348 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 MAPKAP1Q9BPZ7 522 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 DDA1Q9BW61 102 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 ASPSCR1Q9BZE9 553 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 APMAPQ9HDC9 416 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 MIEF1Q9NQG6 463 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 ATAD3AQ9NVI7 634 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 TEX10Q9NXF1 929 aaPredicted RBP10.16□□□□□ -0.78
SS18-213ENST00000579640 KCMF1Q9P0J7 381 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 NDOR1Q9UHB4 597 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 TAGLN3Q9UI15 199 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 PCDHA9Q9Y5H5 950 aa10.16□□□□□ -0.78
SS18-213ENST00000579640 ZNF860A6NHJ4 632 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 BBIP1A8MTZ0 92 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 PLD2O14939 933 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 CFLARO15519 480 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 CHST10O43529 356 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 AKAP10O43572 662 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 LRATO95237 230 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 FURINP09958 794 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 NR2F6P10588 404 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 PIM1P11309 404 aaPredicted RBP10.15□□□□□ -0.78
SS18-213ENST00000579640 COX4I1P13073 169 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 RNH1P13489 461 aaKnown RBP10.15□□□□□ -0.78
SS18-213ENST00000579640 IL10P22301 178 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 IL12AP29459 219 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 STX5Q13190 355 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 CYLC2Q14093 348 aaPredicted RBP10.15□□□□□ -0.78
SS18-213ENST00000579640 DSG2Q14126 1118 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 RSPO4Q2I0M5 234 aaPredicted RBP10.15□□□□□ -0.78
SS18-213ENST00000579640 CPTPQ5TA50 214 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 MSANTD1Q6ZTZ1 278 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 GFM2Q969S9 779 aaKnown RBP10.15□□□□□ -0.78
SS18-213ENST00000579640 CLIP3Q96DZ5 547 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 SPDL1Q96EA4 605 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 B3GNT4Q9C0J1 378 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 ZNF304Q9HCX3 659 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 DHCR7Q9UBM7 475 aaKnown RBP10.15□□□□□ -0.78
SS18-213ENST00000579640 MRPS33Q9Y291 106 aaKnown RBP10.15□□□□□ -0.78
SS18-213ENST00000579640 ATG4BQ9Y4P1 393 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 PCDHGA3Q9Y5H0 932 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 SPTBP11277 2137 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 SCN3AQ9NY46 2000 aa10.15□□□□□ -0.78
SS18-213ENST00000579640 A0A1W2PP18 115 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 A0A1W2PR48 441 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 CCDC154A6NI56 674 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 GABRR3A8MPY1 467 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 AGRPO00253 132 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 NR5A2O00482 541 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 UBOX5O94941 541 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 AIFM1O95831 613 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 ONECUT2O95948 504 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 PGRP06401 933 aa10.14□□□□□ -0.79
SS18-213ENST00000579640 FBLP22087 321 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms