RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 SSR2P43308 183 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 RAP1GDS1P52306 607 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 MRPL49Q13405 166 aaKnown RBP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 UBAP2LQ14157 1087 aaKnown RBP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 CPSF6Q16630 551 aaKnown RBP eCLIP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 MEP1AQ16819 746 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 DEPDC1Q5TB30 811 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 BEST3Q8N1M1 668 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 ACOT4Q8N9L9 421 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 EIF1ADQ8N9N8 165 aaKnown RBP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 ATP6V1E2Q96A05 226 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 MTERF1Q99551 399 aaKnown RBP22.38■■□□□ 1.17
SHMT1-206ENST00000579558 CENPKQ9BS16 269 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 EPB41L4BQ9H329 900 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 LYRM4Q9HD34 91 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 RNF11Q9Y3C5 154 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 TSC22D4Q9Y3Q8 395 aa22.38■■□□□ 1.17
SHMT1-206ENST00000579558 RELNP78509 3460 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 IQANK1A0A1B0GTG1 560 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 H0YIV9 168 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 CYR61O00622 381 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 MYBL2P10244 700 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 HIST1H1TP22492 207 aaPredicted RBP22.37■■□□□ 1.17
SHMT1-206ENST00000579558 CCNG1P51959 295 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 RPUSD3Q6P087 351 aaKnown RBP22.37■■□□□ 1.17
SHMT1-206ENST00000579558 CLNKQ7Z7G1 428 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 KIF2BQ8N4N8 673 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 FAM26EQ8N5C1 309 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 L3MBTL4Q8NA19 623 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 SUN3Q8TAQ9 357 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 ELP5Q8TE02 316 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 GRHL3Q8TE85 626 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 BARD1Q99728 777 aaKnown RBP22.37■■□□□ 1.17
SHMT1-206ENST00000579558 MAPKAP1Q9BPZ7 522 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 PNO1Q9NRX1 252 aaKnown RBP22.37■■□□□ 1.17
SHMT1-206ENST00000579558 KCMF1Q9P0J7 381 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 PSMC3IPQ9P2W1 217 aaPredicted RBP22.37■■□□□ 1.17
SHMT1-206ENST00000579558 FETUBQ9UGM5 382 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 PCTPQ9UKL6 214 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 FLNCQ14315 2725 aa22.37■■□□□ 1.17
SHMT1-206ENST00000579558 CLEC18AA5D8T8 446 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 TGFBR3LH3BV60 316 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 OR7A17O14581 309 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 SCELO95171 688 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 CLDN9O95484 217 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 RPS13P62277 151 aaKnown RBP22.36■■□□□ 1.17
SHMT1-206ENST00000579558 SRSF1Q07955 248 aaKnown RBP eCLIP22.36■■□□□ 1.17
SHMT1-206ENST00000579558 ZRSR2Q15696 482 aaKnown RBP22.36■■□□□ 1.17
SHMT1-206ENST00000579558 FAM180AQ6UWF9 173 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 CLEC18BQ6UXF7 455 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 CLEC18CQ8NCF0 446 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 NFAM1Q8NET5 270 aaPredicted RBP22.36■■□□□ 1.17
SHMT1-206ENST00000579558 OR52B6Q8NGF0 335 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 RGMAQ96B86 450 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 NSUN5Q96P11 429 aaKnown RBP22.36■■□□□ 1.17
SHMT1-206ENST00000579558 CDK15Q96Q40 435 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 NPAS2Q99743 824 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 CCDC77Q9BR77 488 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 SORBS1Q9BX66 1292 aaKnown RBP22.36■■□□□ 1.17
SHMT1-206ENST00000579558 SPACA6W5XKT8 324 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 ESPL1Q14674 2120 aa22.36■■□□□ 1.17
SHMT1-206ENST00000579558 MAN1A2O60476 641 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 MYO1DO94832 1006 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 SBK3P0C264 359 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 PPP2R1BP30154 601 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 OR4C11Q6IEV9 310 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 CDCP1Q9H5V8 836 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 ZBTB26Q9HCK0 441 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 CLDN16Q9Y5I7 305 aa22.35■■□□□ 1.17
SHMT1-206ENST00000579558 SYNDIG1LA6NDD5 238 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 A8MT66 165 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 PLPP1O14494 284 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 PRAMEF2O60811 474 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 CTNSO60931 367 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 CBX6O95503 412 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 RPS17P08708 135 aaKnown RBP22.34■■□□□ 1.17
SHMT1-206ENST00000579558 PTX3P26022 381 aaPredicted RBP22.34■■□□□ 1.17
SHMT1-206ENST00000579558 TERF2Q15554 542 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 INAQ16352 499 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 EIF2S3LQ2VIR3 472 aaKnown RBP22.34■■□□□ 1.17
SHMT1-206ENST00000579558 FHL5Q5TD97 284 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 RPS19BP1Q86WX3 136 aaKnown RBP22.34■■□□□ 1.17
SHMT1-206ENST00000579558 LGI4Q8N135 537 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 TMEM151AQ8N4L1 468 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 B3GNT7Q8NFL0 401 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 WDR20Q8TBZ3 569 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 FAR1Q8WVX9 515 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 UBLCP1Q8WVY7 318 aaPredicted RBP22.34■■□□□ 1.17
SHMT1-206ENST00000579558 UTP23Q9BRU9 249 aaKnown RBP22.34■■□□□ 1.17
SHMT1-206ENST00000579558 NTMT1Q9BV86 223 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 ADAP2Q9NPF8 381 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 SEMA4BQ9NPR2 832 aaPredicted RBP22.34■■□□□ 1.17
SHMT1-206ENST00000579558 TMEM216Q9P0N5 145 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 TBK1Q9UHD2 729 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 FBXW2Q9UKT8 454 aa22.34■■□□□ 1.17
SHMT1-206ENST00000579558 MAST4O15021 2626 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 COL12A1Q99715 3063 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 ANKUB1A6NFN9 424 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 GABRR3A8MPY1 467 aa22.33■■□□□ 1.17
SHMT1-206ENST00000579558 GOLGA8RI6L899 631 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms