RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RAP1GDS1P52306 607 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 RAB38P57729 211 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 RHAGQ02094 409 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 SLC13A2Q13183 592 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 DDX39BQ13838 428 aaKnown RBP7.61□□□□□ -1.19
VPS53-214ENST00000572607 NAA30Q147X3 362 aaPredicted RBP7.61□□□□□ -1.19
VPS53-214ENST00000572607 AP5B1Q2VPB7 878 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 TMEM35AQ53FP2 167 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 PRR30Q53SZ7 412 aaPredicted RBP7.61□□□□□ -1.19
VPS53-214ENST00000572607 TECRLQ5HYJ1 363 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 LIPJQ5W064 366 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 PLAG1Q6DJT9 500 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 GRHL2Q6ISB3 625 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 METTL2BQ6P1Q9 378 aaKnown RBP7.61□□□□□ -1.19
VPS53-214ENST00000572607 ABHD17CQ6PCB6 329 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 CHSY3Q70JA7 882 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 CUZD1Q86UP6 607 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 ZNF595Q8IYB9 648 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 CISD2Q8N5K1 135 aaKnown RBP7.61□□□□□ -1.19
VPS53-214ENST00000572607 SLC5A8Q8N695 610 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 PTGR2Q8N8N7 351 aaPredicted RBP7.61□□□□□ -1.19
VPS53-214ENST00000572607 C7orf57Q8NEG2 295 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 OR1N1Q8NGS0 311 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 M1APQ8TC57 530 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 MS4A6EQ96DS6 147 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 MTBPQ96DY7 904 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 SMIM10Q96HG1 83 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 ZNF354BQ96LW1 612 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 SERINC2Q96SA4 455 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 MMP25Q9NPA2 562 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 PRTFDC1Q9NRG1 225 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 LANCL2Q9NS86 450 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 XPR1Q9UBH6 696 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 PCSK5Q92824 1860 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 SEC16AO15027 2179 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 BLACEA4D250 179 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 OR5H15A6NDH6 313 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 OR2W5A6NFC9 320 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 RIPK2O43353 540 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 KLK8O60259 260 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 UGDHO60701 494 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 RNF224P0DH78 156 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 ITGAMP11215 1152 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 TAC1P20366 129 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 MAOAP21397 527 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 GNLYP22749 145 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 CERS1P27544 350 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 EEF1DP29692 281 aaKnown RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 HNRNPH1P31943 449 aaKnown RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 SSR2P43308 183 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 MAGEA12P43365 314 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 CCNG1P51959 295 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 EFNA3P52797 238 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 HSD17B7P56937 341 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 SLC26A5P58743 744 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 STX4Q12846 297 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 GTF2H2Q13888 395 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 PCBP2Q15366 365 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS53-214ENST00000572607 INAQ16352 499 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 MEP1AQ16819 746 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 ADPRMQ3LIE5 342 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 TEX35Q5T0J7 233 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 UBAP2Q5T6F2 1119 aaKnown RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 FHL5Q5TD97 284 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 GTF2H2CQ6P1K8 395 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 FAM180AQ6UWF9 173 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 GOLGA7Q7Z5G4 137 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 VN1R5Q7Z5H4 357 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 LAS2Q8IYD9 372 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 FAM26EQ8N5C1 309 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 FAM47BQ8NA70 645 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 DCAKDQ8WVC6 231 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 PSMF1Q92530 271 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 HAS2Q92819 552 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 ISL2Q96A47 359 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 SNRNP40Q96DI7 357 aaKnown RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 CMTM7Q96FZ5 175 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 F2RL3Q96RI0 385 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 MRPL57Q9BQC6 102 aaKnown RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 TBCDQ9BTW9 1192 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 MS4A8Q9BY19 250 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 RNF32Q9H0A6 362 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 MRPL46Q9H2W6 279 aaKnown RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 IPPKQ9H8X2 491 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 PLA2G3Q9NZ20 509 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 STMN3Q9NZ72 180 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 ZNF490Q9ULM2 529 aaPredicted RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 ASB1Q9Y576 335 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 PCDHGA11Q9Y5H2 935 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 TNRC6AQ8NDV7 1962 aaKnown RBP7.6□□□□□ -1.19
VPS53-214ENST00000572607 MED13Q9UHV7 2174 aa7.6□□□□□ -1.19
VPS53-214ENST00000572607 PCM1Q15154 2024 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 HIVEP3Q5T1R4 2406 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 TCRBV16S1A1N1A0A5B0 115 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 SAGE2PA6NJ88 616 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 A8MUA0 341 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 TCP11X1B4DZS4 312 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 C4orf51C9J302 202 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 STX16-NPEPL1H3BU86 382 aa7.59□□□□□ -1.19
VPS53-214ENST00000572607 CDK2AP1O14519 115 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms