RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CDC42EP3Q9UKI2 254 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.59■□□□□ 0.25
CLK3-227ENST00000570296 LRRC3CA6NJW4 275 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 PJA2O43164 708 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 NIPSNAP2O75323 286 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 ZNF888P0CJ79 500 aaPredicted RBP16.58■□□□□ 0.24
CLK3-227ENST00000570296 THBS2P35442 1172 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 NR1H2P55055 460 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 TBPL1P62380 186 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 KCNJ2P63252 427 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 DUSP8Q13202 625 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 PHKG1Q16816 387 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 REXO1L1PQ8IX06 675 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 ZNF441Q8N8Z8 693 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 OR8K3Q8NH51 312 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 ZFP3Q96NJ6 502 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 REG4Q9BYZ8 158 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 NAT10Q9H0A0 1025 aaKnown RBP16.58■□□□□ 0.24
CLK3-227ENST00000570296 SH2D2AQ9NP31 389 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 ADAP2Q9NPF8 381 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 TCAF1Q9Y4C2 921 aa16.58■□□□□ 0.24
CLK3-227ENST00000570296 SYNDIG1LA6NDD5 238 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 ERI2A8K979 691 aaKnown RBP16.57■□□□□ 0.24
CLK3-227ENST00000570296 SPRY1O43609 319 aaPredicted RBP16.57■□□□□ 0.24
CLK3-227ENST00000570296 CRYGSP22914 178 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 PPP2R1BP30154 601 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 RGS1Q08116 209 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 VEZF1Q14119 521 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 CLEC12BQ2HXU8 276 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 SLC22A10Q63ZE4 541 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 ADGRD1Q6QNK2 874 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 SYDE1Q6ZW31 735 aaPredicted RBP16.57■□□□□ 0.24
CLK3-227ENST00000570296 TMEM132CQ8N3T6 1108 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 ASB11Q8WXH4 323 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 FAM136AQ96C01 138 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 RHBGQ9H310 441 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 PIGMQ9H3S5 423 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 SH2B3Q9UQQ2 575 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 SVEP1Q4LDE5 3571 aa16.57■□□□□ 0.24
CLK3-227ENST00000570296 SMTNL1A8MU46 457 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 ZNF354AO60765 605 aaPredicted RBP16.56■□□□□ 0.24
CLK3-227ENST00000570296 SERPINC1P01008 464 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 ESR1P03372 595 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 FMO4P31512 558 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 PCYT1AP49585 367 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 BMPR2Q13873 1038 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 ELAVL1Q15717 326 aaKnown RBP16.56■□□□□ 0.24
CLK3-227ENST00000570296 ETFDHQ16134 617 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 STRA8Q7Z7C7 330 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 MED12LQ86YW9 2145 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 FAM71DQ8N9W8 422 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 C9orf106Q8NAJ2 232 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 OR5L2Q8NGL0 311 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 NT5CQ8TCD5 201 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 UTP15Q8TED0 518 aaKnown RBP16.56■□□□□ 0.24
CLK3-227ENST00000570296 PAQR8Q8TEZ7 354 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 ROBO4Q8WZ75 1007 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 ZBED6CLQ96FA7 236 aaPredicted RBP16.56■□□□□ 0.24
CLK3-227ENST00000570296 CAMK2AQ9UQM7 478 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 CLDN16Q9Y5I7 305 aa16.56■□□□□ 0.24
CLK3-227ENST00000570296 PKD1L1Q8TDX9 2849 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 GFYI3L273 518 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 ZBTB14O43829 449 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 AKR1B10O60218 316 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 GYPCP04921 128 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 PTPN7P35236 360 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 HSD17B7P56937 341 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 VASNQ6EMK4 673 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 CA13Q8N1Q1 262 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 LPGAT1Q92604 370 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 DAZLQ92904 295 aaKnown RBP16.55■□□□□ 0.24
CLK3-227ENST00000570296 WFIKKN1Q96NZ8 548 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 BPIFA3Q9BQP9 254 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 GALPQ9UBC7 116 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 CLCA3PQ9Y6N3 262 aa16.55■□□□□ 0.24
CLK3-227ENST00000570296 A8MXE2 369 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 KCNAB3O43448 404 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 OR1F1O43749 312 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 SERPIND1P05546 499 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 CDH1P12830 882 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 GDF1P27539 372 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 DIO3P55073 304 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 RNF4P78317 190 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 FOXF2Q12947 444 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 ZNF791Q3KP31 576 aaPredicted RBP16.54■□□□□ 0.24
CLK3-227ENST00000570296 TTLL9Q3SXZ7 439 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 NHSL2Q5HYW2 709 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 PPP1R21Q6ZMI0 780 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 MORN4Q8NDC4 146 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 ABHD11Q8NFV4 315 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 KRT35Q92764 455 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 MARK4Q96L34 752 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 HS3ST6Q96QI5 342 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 OSBPL8Q9BZF1 889 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 GOLPH3Q9H4A6 298 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 KLHL28Q9NXS3 571 aa16.54■□□□□ 0.24
CLK3-227ENST00000570296 TRBC2A0A5B9 178 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 URADA6NGE7 173 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 TGFBR3LH3BV60 316 aa16.53■□□□□ 0.24
CLK3-227ENST00000570296 MPC1LP0DKB6 136 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms