RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ALDH3B1P43353 468 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 FNTAP49354 379 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 PTENP60484 403 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 NUCB1Q02818 461 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 CETN1Q12798 172 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 CNTN1Q12860 1018 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 COG2Q14746 738 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 HYAL4Q2M3T9 481 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 CNPY1Q3B7I2 92 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 TCP11X2Q5H9J9 407 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 C1orf141Q5JVX7 400 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 BTNL8Q6UX41 500 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 ZNF600Q6ZNG1 722 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 CCAR2Q8N163 923 aaKnown RBP2.08□□□□□ -2.08
VPS35-207ENST00000568191 NCOA7Q8NI08 942 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 TSSK2Q96PF2 358 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 MAPKAP1Q9BPZ7 522 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 VIPAS39Q9H9C1 493 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 PFDN4Q9NQP4 134 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 ZNF275Q9NSD4 429 aaPredicted RBP2.08□□□□□ -2.08
VPS35-207ENST00000568191 NKIRAS2Q9NYR9 191 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 NFKBIL1Q9UBC1 381 aaPredicted RBP2.08□□□□□ -2.08
VPS35-207ENST00000568191 LOC390937A0A1W2PQ73 354 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 TSPY2A6NKD2 308 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 LMO7DNF2Z398 122 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 GRAP2O75791 330 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 ANGPTL1O95841 491 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 PDGFBP01127 241 aaPredicted RBP2.07□□□□□ -2.08
VPS35-207ENST00000568191 DLATP10515 647 aaKnown RBP2.07□□□□□ -2.08
VPS35-207ENST00000568191 PPP2R1BP30154 601 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 NPY4RP50391 375 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 IST1P53990 364 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 HMGCS2P54868 508 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 ADARP55265 1226 aaKnown RBP2.07□□□□□ -2.08
VPS35-207ENST00000568191 EVCP57679 992 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 ERVPABLB-1P60509 514 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 ZNF273Q14593 569 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 GSG1Q2KHT4 349 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 ARMCX4Q5H9R4 360 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 PAMR1Q6UXH9 720 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 NUFIP2Q7Z417 695 aaKnown RBP2.07□□□□□ -2.08
VPS35-207ENST00000568191 C4orf19Q8IY42 314 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 ZNF525Q8N782 197 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 CLEC1AQ8NC01 280 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 OR6T1Q8NGN1 323 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 OR13C5Q8NGS8 318 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 OCC1Q8TAD7 63 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 EXOC4Q96A65 974 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 RCHY1Q96PM5 261 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 MTIF3Q9H2K0 278 aaKnown RBP2.07□□□□□ -2.08
VPS35-207ENST00000568191 RABEP2Q9H5N1 569 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 FNDC4Q9H6D8 234 aaPredicted RBP2.07□□□□□ -2.08
VPS35-207ENST00000568191 MRGBPQ9NV56 204 aa2.07□□□□□ -2.08
VPS35-207ENST00000568191 TRAV9-2A0A087WT02 112 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 A0A1W2PQ72 361 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ZSCAN5CA6NGD5 496 aaPredicted RBP2.06□□□□□ -2.08
VPS35-207ENST00000568191 FOXI3A8MTJ6 420 aaPredicted RBP2.06□□□□□ -2.08
VPS35-207ENST00000568191 ZNF487B1APH4 448 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 FLRT2O43155 660 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 LRRTM2O43300 516 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 OR6B1O95007 311 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 SEMA4FO95754 770 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 CCDC175P0C221 793 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 SP9P0CG40 484 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 PRKAR2BP31323 418 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 RAD23AP54725 363 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 OVGP1Q12889 678 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ABRQ12979 859 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 TEX35Q5T0J7 233 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ALKBH5Q6P6C2 394 aaKnown RBP2.06□□□□□ -2.08
VPS35-207ENST00000568191 TRAT1Q6PIZ9 186 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ABRAXAS1Q6UWZ7 409 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 TMEM182Q6ZP80 229 aaPredicted RBP2.06□□□□□ -2.08
VPS35-207ENST00000568191 SPATA21Q7Z572 469 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 SLC43A2Q8N370 569 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 TMEM99Q8N816 258 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ZNF781Q8N8C0 355 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 SAMD12Q8N8I0 201 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 IQUBQ8NA54 791 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 HEXDCQ8WVB3 486 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 LIPHQ8WWY8 451 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ZNF274Q96GC6 653 aaPredicted RBP2.06□□□□□ -2.08
VPS35-207ENST00000568191 MAGEB18Q96M61 343 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 SIGLEC12Q96PQ1 595 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 SERINC2Q96SA4 455 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ZBP1Q9H171 429 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 OR10A4Q9H209 315 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 ELL3Q9HB65 397 aaPredicted RBP2.06□□□□□ -2.08
VPS35-207ENST00000568191 DHRS4-AS1Q9P1J3 65 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 CLEC4EQ9ULY5 219 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 CCL27Q9Y4X3 112 aa2.06□□□□□ -2.08
VPS35-207ENST00000568191 TRBV5-4A0A0C4DH59 114 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 NEDD8-MDP1E9PL57 170 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 PLOD3O60568 738 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 EIF5BO60841 1220 aaKnown RBP2.05□□□□□ -2.08
VPS35-207ENST00000568191 VENTXO95231 258 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 LYNP07948 512 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 HCKP08631 526 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 ANKRD34CP0C6C1 535 aa2.05□□□□□ -2.08
VPS35-207ENST00000568191 HSD17B1P14061 328 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms