RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF860A6NHJ4 632 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 NTN3O00634 580 aaPredicted RBP28.97■■■□□ 2.23
CTCF-203ENST00000566078 GUCY1B2O75343 617 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 FOLR1P15328 257 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 WNT3P56703 355 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 PSME3P61289 254 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 C6orf10Q5SRN2 563 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 NDUFAF5Q5TEU4 345 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 ARHGAP22Q7Z5H3 698 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 PDSS2Q86YH6 399 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 RCBTB1Q8NDN9 531 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 GTF2H4Q92759 462 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 UTP4Q969X6 686 aaKnown RBP28.97■■■□□ 2.23
CTCF-203ENST00000566078 C10orf90Q96M02 699 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 RAB3IPQ96QF0 476 aaPredicted RBP28.97■■■□□ 2.23
CTCF-203ENST00000566078 MAPKAP1Q9BPZ7 522 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 BHLHE41Q9C0J9 482 aaPredicted RBP28.97■■■□□ 2.23
CTCF-203ENST00000566078 ANKHQ9HCJ1 492 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 SLAMF8Q9P0V8 285 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 ATG4BQ9Y4P1 393 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 PCDHGA7Q9Y5G6 932 aa28.97■■■□□ 2.23
CTCF-203ENST00000566078 D6RAR5 112 aa28.96■■■□□ 2.23
CTCF-203ENST00000566078 FXYD1O00168 92 aa28.96■■■□□ 2.23
CTCF-203ENST00000566078 GALR3O60755 368 aaPredicted RBP28.96■■■□□ 2.23
CTCF-203ENST00000566078 SPIDRQ14159 915 aa28.96■■■□□ 2.23
CTCF-203ENST00000566078 NDUFA9Q16795 377 aa28.96■■■□□ 2.23
CTCF-203ENST00000566078 LRRC58Q96CX6 371 aa28.96■■■□□ 2.23
CTCF-203ENST00000566078 ITCHQ96J02 903 aa28.96■■■□□ 2.23
CTCF-203ENST00000566078 MUC6Q6W4X9 2439 aa28.96■■■□□ 2.23
CTCF-203ENST00000566078 HYKKA2RU49 373 aa28.95■■■□□ 2.23
CTCF-203ENST00000566078 C4orf47A7E2U8 309 aa28.95■■■□□ 2.23
CTCF-203ENST00000566078 KCNH1O95259 989 aa28.95■■■□□ 2.23
CTCF-203ENST00000566078 CORO7P57737 925 aa28.95■■■□□ 2.23
CTCF-203ENST00000566078 OLR1P78380 273 aa28.95■■■□□ 2.23
CTCF-203ENST00000566078 CAPRIN1Q14444 709 aaKnown RBP28.95■■■□□ 2.23
CTCF-203ENST00000566078 C8orf82Q6P1X6 216 aaPredicted RBP28.95■■■□□ 2.23
CTCF-203ENST00000566078 TTC29Q8NA56 475 aaPredicted RBP28.95■■■□□ 2.23
CTCF-203ENST00000566078 A0A1W2PR48 441 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 FITM1A5D6W6 292 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 PRKRAO75569 313 aaKnown RBP28.94■■■□□ 2.22
CTCF-203ENST00000566078 OR2B3O76000 313 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 MED26O95402 600 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 AIFM1O95831 613 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 DRD2P14416 443 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 GRM7Q14831 915 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 PRSS53Q2L4Q9 553 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 MUM1Q2TAK8 710 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 PHF19Q5T6S3 580 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 DNAJC14Q6Y2X3 702 aaPredicted RBP28.94■■■□□ 2.22
CTCF-203ENST00000566078 BNC2Q6ZN30 1099 aaPredicted RBP28.94■■■□□ 2.22
CTCF-203ENST00000566078 ARHGAP24Q8N264 748 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 OR1L3Q8NH93 324 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 FANCEQ9HB96 536 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 SERHLQ9NQF3 203 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 C5AR2Q9P296 337 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 PHF11Q9UIL8 331 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 MAN2B2Q9Y2E5 1009 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 HCN4Q9Y3Q4 1203 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 TBX19O60806 448 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 SCN2BO60939 215 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 MSL3P1P0C860 447 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 EFNA1P20827 205 aaPredicted RBP28.94■■■□□ 2.22
CTCF-203ENST00000566078 FOXM1Q08050 763 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 RUNX2Q13950 521 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 ANXA8L1Q5VT79 327 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 GARNL3Q5VVW2 1013 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 DLEU7Q6UYE1 221 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 SLITRK4Q8IW52 837 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 OR9A4Q8NGU2 314 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 CIDECQ96AQ7 238 aaPredicted RBP28.94■■■□□ 2.22
CTCF-203ENST00000566078 CLPTM1LQ96KA5 538 aa28.94■■■□□ 2.22
CTCF-203ENST00000566078 GPATCH1Q9BRR8 931 aaKnown RBP28.94■■■□□ 2.22
CTCF-203ENST00000566078 SEC23IPQ9Y6Y8 1000 aaKnown RBP28.94■■■□□ 2.22
CTCF-203ENST00000566078 H3BMH7 237 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 SGK494L7N484 410 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 PROM1O43490 865 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 NPPAP01160 153 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 LIM2P55344 173 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 C18orf63Q68DL7 685 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 PRMT9Q6P2P2 845 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 CLECL1Q8IZS7 167 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 VPS37AQ8NEZ2 397 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 UCN3Q969E3 161 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 MIEF2Q96C03 454 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 HOPXQ9BPY8 73 aaPredicted RBP28.93■■■□□ 2.22
CTCF-203ENST00000566078 INPP5KQ9BT40 448 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 PRPF19Q9UMS4 504 aaKnown RBP28.93■■■□□ 2.22
CTCF-203ENST00000566078 DAPP1Q9UN19 280 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 PCDHA9Q9Y5H5 950 aa28.93■■■□□ 2.22
CTCF-203ENST00000566078 CBFA2T3O75081 653 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 DNAJB6O75190 326 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 RDH16O75452 317 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 DDX5P17844 614 aaKnown RBP28.92■■■□□ 2.22
CTCF-203ENST00000566078 ITGA1P56199 1179 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 TNFRSF17Q02223 184 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 MPEG1Q2M385 716 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 ULK2Q8IYT8 1036 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 DTWD1Q8N5C7 304 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 FAM47BQ8NA70 645 aa28.92■■■□□ 2.22
CTCF-203ENST00000566078 EXOSC8Q96B26 276 aaKnown RBP28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms