RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 KCMF1Q9P0J7 381 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 MEMO1Q9Y316 297 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 ASB1Q9Y576 335 aa16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 NCOA6Q14686 2063 aaPredicted RBP16.05■□□□□ 0.16
VPS9D1-203ENST00000563798 APCP25054 2843 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 A0A0G2JN53 185 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 KLRC4-KLRK1H3BQV0 150 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 ITGA10O75578 1167 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 SCELO95171 688 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 ESRRAP11474 423 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 HTR1EP28566 365 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 TNFRSF8P28908 595 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 PTGER4P35408 488 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 SLC13A2Q13183 592 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 ELAVL1Q15717 326 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 ADNP2Q6IQ32 1131 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 ISCA2Q86U28 154 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 GPALPP1Q8IXQ4 340 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 LAS2Q8IYD9 372 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 ZFP62Q8NB50 900 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 SRFBP1Q8NEF9 429 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 C7orf57Q8NEG2 295 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 STAG3L4Q8TBR4 150 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 NCLNQ969V3 563 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 TBCDQ9BTW9 1192 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 PNO1Q9NRX1 252 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 VTI1BQ9UEU0 232 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 SH3BGRL2Q9UJC5 107 aa16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 YARS2Q9Y2Z4 477 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-203ENST00000563798 CCDC189A1A4V9 331 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 TMEM200CA6NKL6 621 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 ZFAND5O76080 213 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 SLC35E2BP0CK96 405 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 CERS1P27544 350 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 PPP2R1BP30154 601 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 SERPINB1P30740 379 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 IRF8Q02556 426 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 GUCY2DQ02846 1103 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 CHIT1Q13231 466 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 NAB1Q13506 487 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 HIST2H2ACQ16777 129 aaPredicted RBP16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 KBTBD12Q3ZCT8 623 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 TMEM35AQ53FP2 167 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 FBXO48Q5FWF7 155 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 HIST2H2AA3Q6FI13 130 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 FGD2Q7Z6J4 655 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 UBE3DQ7Z6J8 389 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 SULF2Q8IWU5 870 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 MCEMP1Q8IX19 187 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 TMEM132CQ8N3T6 1108 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 TMEM156Q8N614 296 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 SNX31Q8N9S9 440 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 FAM47BQ8NA70 645 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 MORN4Q8NDC4 146 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 ZNF473Q8WTR7 871 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 UBTD2Q8WUN7 234 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 UBE2E3Q969T4 207 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 KCNC2Q96PR1 638 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 F2RL3Q96RI0 385 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 ATOH8Q96SQ7 321 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 CCDC77Q9BR77 488 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 MS4A8Q9BY19 250 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 NMRAL1Q9HBL8 299 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 PLSCR2Q9NRY7 297 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 NUDT4Q9NZJ9 180 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 RNF112Q9ULX5 631 aa16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 UTP11Q9Y3A2 253 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-203ENST00000563798 E9PLN8 166 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 ADAM10O14672 748 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 PEX1O43933 1283 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 KERAO60938 352 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 S100BP04271 92 aaPredicted RBP16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 CRABP2P29373 138 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 STX2P32856 288 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 MAGEA4P43358 317 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 MEOX1P50221 254 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 PLTPP55058 493 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 C2orf54Q08AI8 447 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 DLG1Q12959 904 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 ZDHHC24Q6UX98 284 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 ZNF572Q7Z3I7 529 aaPredicted RBP16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 CCDC91Q7Z6B0 441 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 DOLPP1Q86YN1 238 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 CTAGE3PQ8IX95 158 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 CYP4Z2PQ8N1L4 340 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 OR8K3Q8NH51 312 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 FBXO25Q8TCJ0 367 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 PTPMT1Q8WUK0 201 aaPredicted RBP16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 DAZLQ92904 295 aaKnown RBP16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 PHF12Q96QT6 1004 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 DMRTA2Q96SC8 542 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 CSF3RQ99062 836 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 VKORC1Q9BQB6 163 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 RAB17Q9H0T7 212 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 COPS7BQ9H9Q2 264 aaPredicted RBP16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 IGSF5Q9NSI5 407 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 FBXW2Q9UKT8 454 aa16.02■□□□□ 0.16
VPS9D1-203ENST00000563798 PRKNO60260 465 aaPredicted RBP16.01■□□□□ 0.15
VPS9D1-203ENST00000563798 CCNT2O60583 730 aaKnown RBP16.01■□□□□ 0.15
VPS9D1-203ENST00000563798 ABOP16442 354 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms