RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 PGBD1Q96JS3 809 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 OR6C1Q96RD1 312 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 CCNL2Q96S94 520 aaPredicted RBP4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 MMTAG2Q9BU76 263 aaKnown RBP4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 FNDC11Q9BVV2 318 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 SF3B5Q9BWJ5 86 aaKnown RBP4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 BBS2Q9BXC9 721 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 LRRC2Q9BYS8 371 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 SLC26A1Q9H2B4 701 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 RAD21L1Q9H4I0 556 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 CATSPERBQ9H7T0 1116 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 NEK6Q9HC98 313 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 APMAPQ9HDC9 416 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 TREM1Q9NP99 234 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 FAM207AQ9NSI2 230 aaPredicted RBP4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 OSER1Q9NX31 292 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 DPP3Q9NY33 737 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 SEMA5BQ9P283 1151 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 FZD4Q9ULV1 537 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 ERVK-11Q9UQG0 969 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 IFT52Q9Y366 437 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 ADGRA2Q96PE1 1338 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 NID2Q14112 1375 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 LAMB1P07942 1786 aa4.91□□□□□ -1.62
VPS35P1-201ENST00000563400 BAZ2AQ9UIF9 1905 aaKnown RBP4.9□□□□□ -1.62
VPS35P1-201ENST00000563400 ELP1O95163 1332 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 A0A1W2PPK0 400 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 MAGEB16A2A368 324 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 CXorf65A6NEN9 183 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 M0QZ92 97 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 MATN2O00339 956 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 RNF13O43567 381 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 SSX4O60224 188 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 CDH16O75309 829 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 STBD1O95210 358 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 CD63P08962 238 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF28P17035 718 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ELAVL4P26378 380 aaKnown RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 NMT1P30419 496 aaKnown RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 MAGEA8P43361 318 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 CDX1P47902 265 aaPredicted RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ENPEPQ07075 957 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 MEP1AQ16819 746 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 PCK2Q16822 640 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 NKAIN1Q4KMZ8 207 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 CMPK2Q5EBM0 449 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ZMAT1Q5H9K5 638 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM76BQ5HYJ3 339 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF618Q5T7W0 954 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 PRAMEF5Q5TYX0 476 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 PRAMEF6Q5VXH4 476 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 PRR27Q6MZM9 219 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 MFSD12Q6NUT3 480 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 KIRREL2Q6UWL6 708 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 SYT10Q6XYQ8 523 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 LCNL1Q6ZST4 164 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 YRDCQ86U90 279 aaKnown RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ECHDC2Q86YB7 292 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 C1orf210Q8IVY1 113 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 VANGL1Q8TAA9 524 aaPredicted RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 FRG2BQ96QU4 278 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 RIT2Q99578 217 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 GFI1Q99684 422 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 C17orf62Q9BQA9 187 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 RTP3Q9BQQ7 232 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 SPATA25Q9BR10 227 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM43Q9BTV4 400 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 TDRD1Q9BXT4 1180 aaKnown RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 FTHL17Q9BXU8 183 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 TEX101Q9BY14 249 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ADGRE3Q9BY15 652 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 GPR87Q9BY21 358 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 SLC2A11Q9BYW1 496 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 DPAGT1Q9H3H5 408 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 L2HGDHQ9H9P8 463 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 PXMP2Q9NR77 195 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 ANKRD10Q9NXR5 420 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 TRPM5Q9NZQ8 1165 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 SLC9A2Q9UBY0 812 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 BARX2Q9UMQ3 279 aaPredicted RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 NR2E1Q9Y466 385 aa4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 HEMK1Q9Y5R4 338 aaPredicted RBP4.9□□□□□ -1.63
VPS35P1-201ENST00000563400 GOLGB1Q14789 3259 aaKnown RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM247A6NEH6 219 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 SDHDO14521 159 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 TSPAN1O60635 241 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 FCMRO60667 390 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 NIPSNAP2O75323 286 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 MMP1P03956 469 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 CAPN1P07384 714 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 SLC2A3P11169 496 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PI3P19957 117 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 UQCRC2P22695 453 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 UCP1P25874 307 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 ITGA3P26006 1051 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 PTGFRP43088 359 aa4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 RPS5P46782 204 aaKnown RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 ALDH7A1P49419 539 aaKnown RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 RPL23AP62750 156 aaKnown RBP4.89□□□□□ -1.63
VPS35P1-201ENST00000563400 BNC1Q01954 994 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms