RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 MMADHCQ9H3L0 296 aaPredicted RBP10.65□□□□□ -0.7
USP3-218ENST00000560202 IL1RL2Q9HB29 575 aa10.65□□□□□ -0.7
USP3-218ENST00000560202 VCX3AQ9NNX9 186 aa10.65□□□□□ -0.7
USP3-218ENST00000560202 SH3BP4Q9P0V3 963 aa10.65□□□□□ -0.7
USP3-218ENST00000560202 MRPS2Q9Y399 296 aaKnown RBP10.65□□□□□ -0.7
USP3-218ENST00000560202 ARID1BQ8NFD5 2236 aaPredicted RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 A0A088AWK7 358 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 GUCY1B2O75343 617 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 NPPAP01160 153 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 CKMT2P17540 419 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 DDCP20711 480 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 ZNF10P21506 573 aaPredicted RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 VHLP40337 213 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 WNT3P56703 355 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 PSME3P61289 254 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 PLIN5Q00G26 463 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 KCNAB1Q14722 419 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 KPNB1Q14974 876 aaKnown RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 TRMT5Q32P41 509 aaKnown RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 DEFB134Q4QY38 66 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 TCTE1Q5JU00 501 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 C8orf82Q6P1X6 216 aaPredicted RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 TICAM1Q8IUC6 712 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 MMP21Q8N119 569 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 ARHGAP24Q8N264 748 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 D2HGDHQ8N465 521 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 ARHGEF39Q8N4T4 335 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 OR4D9Q8NGE8 314 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 FAM81AQ8TBF8 368 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 MIPOL1Q8TD10 442 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 GTF2H4Q92759 462 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 ATOH1Q92858 354 aaPredicted RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 PPCDCQ96CD2 204 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 LRRC58Q96CX6 371 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 SERINC2Q96SA4 455 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 DPYSL5Q9BPU6 564 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 HOPXQ9BPY8 73 aaPredicted RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 GPATCH1Q9BRR8 931 aaKnown RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 DUSP26Q9BV47 211 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 EDEM2Q9BV94 578 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 ZNF768Q9H5H4 540 aaKnown RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 SYNDIG1Q9H7V2 258 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 RMND5AQ9H871 391 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 MIEF1Q9NQG6 463 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 RXFP3Q9NSD7 469 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 SEMA4GQ9NTN9 838 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 ATAD3AQ9NVI7 634 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 CHCHD3Q9NX63 227 aaKnown RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 TEX10Q9NXF1 929 aaPredicted RBP10.64□□□□□ -0.71
USP3-218ENST00000560202 SLAMF8Q9P0V8 285 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 ASB4Q9Y574 426 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 PCDHGA7Q9Y5G6 932 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 SLC22A7Q9Y694 548 aa10.64□□□□□ -0.71
USP3-218ENST00000560202 MAGEA13PA6NCF6 341 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 FXYD1O00168 92 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 B3GALT2O43825 422 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 SCN2BO60939 215 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 KCNH1O95259 989 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 CD59P13987 128 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 DRD2P14416 443 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 NELFEP18615 380 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 ACP1P24666 158 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 FOXM1Q08050 763 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 CAPRIN1Q14444 709 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 CLPPQ16740 277 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 LRRC23Q53EV4 343 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 ZNF385BQ569K4 471 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 C6orf10Q5SRN2 563 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 TMTC4Q5T4D3 741 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 NDUFAF5Q5TEU4 345 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 DLEU7Q6UYE1 221 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 BNC2Q6ZN30 1099 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 DHDDSQ86SQ9 333 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ITCHQ96J02 903 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 CLPTM1LQ96KA5 538 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 NR1H4Q96RI1 486 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 CDRT15Q96T59 188 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 SLC39A3Q9BRY0 314 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 FAIM2Q9BWQ8 316 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 BHLHE41Q9C0J9 482 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 TMEM9BQ9NQ34 198 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 SERHLQ9NQF3 203 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 IRAK4Q9NWZ3 460 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 FAM120CQ9NX05 1096 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 LYARQ9NX58 379 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 FTSJ1Q9UET6 329 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 FBXW2Q9UKT8 454 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 PRPF19Q9UMS4 504 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 MAN2B2Q9Y2E5 1009 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ATG4BQ9Y4P1 393 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 GPR179Q6PRD1 2367 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 IGHV5-10-1A0A0J9YXX1 117 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 PRSS51A0A1B0GVH4 220 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 A0A1W2PR48 441 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 NVLO15381 856 aaKnown RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 GALR3O60755 368 aaPredicted RBP10.63□□□□□ -0.71
USP3-218ENST00000560202 TBX19O60806 448 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 ANKRD34CP0C6C1 535 aa10.63□□□□□ -0.71
USP3-218ENST00000560202 MSL3P1P0C860 447 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms