RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 MYOCOSA0A1B0GUC4 107 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 A0A1W2PS29 197 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 WASHC1A8K0Z3 465 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 EFCAB7A8K855 629 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 ERI3O43414 337 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 TMPRSS11DO60235 418 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 UGDHO60701 494 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 LRP3O75074 770 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 ULK1O75385 1050 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 LRATO95237 230 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 TGDSO95455 350 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 CPNE6O95741 557 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 CHEK2O96017 543 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 KRT6AP02538 564 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PF4P02776 101 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 KRT6BP04259 564 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 FGF4P08620 206 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 FTH1P19P0C7X4 201 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PRR35P0CG20 571 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SPTBP11277 2137 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PNLIPP16233 465 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SDC1P18827 310 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 ITIH1P19827 911 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 NCF2P19878 526 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 EFNA1P20827 205 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 CERS1P27544 350 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 IL12AP29459 219 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PTGER1P34995 402 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 KRT6CP48668 564 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 DUSP3P51452 185 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 INHBCP55103 352 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 MAT1AQ00266 395 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 TBL3Q12788 808 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 SLC14A1Q13336 389 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SPIDRQ14159 915 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SLC9A5Q14940 896 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 HIST2H2ACQ16777 129 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 SYT16Q17RD7 645 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PRSS53Q2L4Q9 553 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 INAVAQ3KP66 663 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 RFTN2Q52LD8 501 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 PAGE2BQ5JRK9 111 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SPDYAQ5MJ70 313 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 C6orf136Q5SQH8 315 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 HES3Q5TGS1 186 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 C1orf189Q5VU69 101 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 KHDRBS2Q5VWX1 349 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 HIST2H2AA3Q6FI13 130 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 FAM180BQ6P0A1 224 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 TMEM71Q6P5X7 295 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 WDR74Q6RFH5 385 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 GK5Q6ZS86 529 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 LARP4Q71RC2 724 aaKnown RBP eCLIP4.95□□□□□ -1.62
SPG11-220ENST00000559933 COMMD6Q7Z4G1 85 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PRSS42Q7Z5A4 293 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PIGWQ7Z7B1 504 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 ASPGQ86U10 573 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PLXDC1Q8IUK5 500 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 LIX1Q8N485 282 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 ARHGEF39Q8N4T4 335 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 KRTCAP2Q8N6L1 136 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 ZNF655Q8N720 491 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 CSNK1A1LQ8N752 337 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 AMER2Q8N7J2 671 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 FNDC5Q8NAU1 212 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 OR4D9Q8NGE8 314 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 OR5T3Q8NGG3 340 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 OR8K5Q8NH50 307 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SLC13A3Q8WWT9 602 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 GATAD2BQ8WXI9 593 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 GFM2Q969S9 779 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 SLC41A2Q96JW4 573 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 TEX37Q96LM6 180 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 C10orf90Q96M02 699 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 TMEM74Q96NL1 305 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 TSSK3Q96PN8 268 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 C17orf62Q9BQA9 187 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 MS4A8Q9BY19 250 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 PCBD2Q9H0N5 130 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 MYLK2Q9H1R3 596 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 KCNH6Q9H252 994 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 EHD1Q9H4M9 534 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 LRTM1Q9HBL6 345 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 TCF7L2Q9NQB0 619 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 IRAK4Q9NWZ3 460 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SIDT1Q9NXL6 827 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 DHCR7Q9UBM7 475 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 HEY2Q9UBP5 337 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 EPHA6Q9UF33 1036 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 ZFP69BQ9UJL9 534 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SNX7Q9UNH6 387 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 STK38LQ9Y2H1 464 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 TMEM184BQ9Y519 407 aaPredicted RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 COPG1Q9Y678 874 aaKnown RBP4.95□□□□□ -1.62
SPG11-220ENST00000559933 AP1M2Q9Y6Q5 423 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 MAU2Q9Y6X3 613 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 SCN3AQ9NY46 2000 aa4.95□□□□□ -1.62
SPG11-220ENST00000559933 FER1L5A0AVI2 2057 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms