RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 PRKNO60260 465 aaPredicted RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 LDB3O75112 727 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 PRKRAO75569 313 aaKnown RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 UNC5CO95185 931 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 CYC1P08574 325 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 EDN3P14138 238 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 TSPAN8P19075 237 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 TNNI3P19429 210 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 ATP5A1P25705 553 aaKnown RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 TPP2P29144 1249 aaPredicted RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 NEK2P51955 445 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 RPS13P62277 151 aaKnown RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 SETDB1Q15047 1291 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 ACAP2Q15057 778 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 CPSF6Q16630 551 aaKnown RBP eCLIP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 MAPKAPK3Q16644 382 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 ADPRMQ3LIE5 342 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 RPUSD3Q6P087 351 aaKnown RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 GFRALQ6UXV0 394 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 GALNTL5Q7Z4T8 443 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 GOLGA7Q7Z5G4 137 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 FJX1Q86VR8 437 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 GSPT2Q8IYD1 628 aaKnown RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 SLC5A8Q8N695 610 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 ZNF321PQ8N8H1 164 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 ACOT4Q8N9L9 421 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 KIF18AQ8NI77 898 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 UBTD2Q8WUN7 234 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 NR4A3Q92570 626 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 NCLNQ969V3 563 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 C5orf34Q96MH7 638 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 NPLQ9BXD5 320 aaPredicted RBP11.7□□□□□ -0.54
SMAD3-208ENST00000558827 ACTR8Q9H981 624 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 ABI3Q9P2A4 366 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 COPG2Q9UBF2 871 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 DAPP1Q9UN19 280 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 RNF11Q9Y3C5 154 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 CLDN16Q9Y5I7 305 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 IKBKGQ9Y6K9 419 aa11.7□□□□□ -0.54
SMAD3-208ENST00000558827 CROCCQ5TZA2 2017 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 A0A088AWK7 358 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 SYCE1LA8MT33 242 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 CYR61O00622 381 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 CLDN4O14493 209 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 LDLRP01130 860 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 FAM153BP0C7A2 387 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 ZNF10P21506 573 aaPredicted RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 EEF1DP29692 281 aaKnown RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 RFC3P40938 356 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 CASP2P42575 452 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 SSR2P43308 183 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 TDGF1P3P51864 188 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 MLF1P58340 268 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 TGM3Q08188 693 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 SLAMF1Q13291 335 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 GTF2H2Q13888 395 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 TBCCQ15814 346 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 AP5B1Q2VPB7 878 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 FAM153CQ494X1 144 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 C4orf17Q53FE4 359 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 SGO1Q5FBB7 561 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 TECRLQ5HYJ1 363 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 TEX35Q5T0J7 233 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 ZNF324BQ6AW86 544 aaPredicted RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 GRHL2Q6ISB3 625 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 GTF2H2CQ6P1K8 395 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 KLC3Q6P597 504 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 SCUBE1Q8IWY4 988 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 MDS2Q8NDY4 140 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 HUS1BQ8NHY5 278 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 DCAKDQ8WVC6 231 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 UCN3Q969E3 161 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 ATP6V1E2Q96A05 226 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 NSUN5Q96P11 429 aaKnown RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 SLX1AQ9BQ83 275 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 ALOXE3Q9BYJ1 711 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 PITHD1Q9GZP4 211 aaPredicted RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 RNF32Q9H0A6 362 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 NOL11Q9H8H0 719 aaKnown RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 IPPKQ9H8X2 491 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 CLK4Q9HAZ1 481 aaKnown RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 KCMF1Q9P0J7 381 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 LRFN1Q9P244 771 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 ZNF223Q9UK11 482 aaPredicted RBP11.69□□□□□ -0.54
SMAD3-208ENST00000558827 MMACHCQ9Y4U1 282 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 CACNA1DQ01668 2161 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 CENPEQ02224 2701 aa11.69□□□□□ -0.54
SMAD3-208ENST00000558827 DOPEY1Q5JWR5 2465 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 A0A087WUV0 522 aaPredicted RBP11.68□□□□□ -0.54
SMAD3-208ENST00000558827 TRGV8A0A0C4DH27 118 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 NPIPA5E9PKD4 350 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 NEURL1O76050 574 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 CLDN1O95832 211 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 GBAP04062 536 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 SP1P08047 785 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 CD46P15529 392 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 CPN2P22792 545 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 RAP1GDS1P52306 607 aa11.68□□□□□ -0.54
SMAD3-208ENST00000558827 ALDH18A1P54886 795 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms