RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 LMNTD2Q8IXW0 634 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 LSMEM2Q8N112 164 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 TEX26Q8N6G2 289 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 CNBD1Q8NA66 436 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 KLHDC9Q8NEP7 349 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 OR4D10Q8NGI6 311 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 SAP25Q8TEE9 199 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 GLYATL1Q969I3 302 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 NEDD4LQ96PU5 975 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 CCM2Q9BSQ5 444 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 NTMT1Q9BV86 223 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 FTHL17Q9BXU8 183 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 THAP2Q9H0W7 228 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 ZNF334Q9HCZ1 680 aaPredicted RBP3.82□□□□□ -1.8
PRPF39-210ENST00000556718 PLEK2Q9NYT0 353 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.82□□□□□ -1.8
PRPF39-210ENST00000556718 ZNF319Q9P2F9 582 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 COPS7AQ9UBW8 275 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 BLOC1S6Q9UL45 172 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 TMCC3Q9ULS5 477 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 C2CD2Q9Y426 696 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 KIF3AQ9Y496 699 aa3.82□□□□□ -1.8
PRPF39-210ENST00000556718 ARID2Q68CP9 1835 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TNIKQ9UKE5 1360 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 UBE4BO95155 1302 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 STK36Q9NRP7 1315 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 A0A087WZ39 114 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 NME2P1O60361 137 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 LMX1BO60663 402 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 SAP30O75446 220 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TRMUO75648 421 aaKnown RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CDC123O75794 336 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 SEC24AO95486 1093 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 EML2O95834 649 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 EPOP01588 193 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 VTNP04004 478 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 GPIP06744 558 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CT45A8P0DMV1 189 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CT45A9P0DMV2 189 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ODC1P11926 461 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ACKR3P25106 362 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CRIP2P52943 208 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CNTN1Q12860 1018 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 GPR50Q13585 617 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 DPYSQ14117 519 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TMEM132DQ14C87 1099 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 KARSQ15046 597 aaKnown RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TAF7Q15545 349 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TRADDQ15628 312 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 DUSP5Q16690 384 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CT45A2Q5DJT8 189 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 HERC4Q5GLZ8 1057 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ATP1A1-AS1Q5TC04 95 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 NKAIN2Q5VXU1 208 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 HIST2H2AA3Q6FI13 130 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ZNF790Q6PG37 636 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ISLR2Q6UXK2 745 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 UNC5DQ6UXZ4 953 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TMEM64Q6YI46 380 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 C1orf186Q6ZWK4 172 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TRMT1LQ7Z2T5 733 aaKnown RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 OR5T2Q8NGG2 359 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 OR10G8Q8NGN5 311 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CHURC1Q8WUH1 139 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 APOBEC4Q8WW27 367 aaKnown RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 CASP10Q92851 521 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 SYAP1Q96A49 352 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ESAMQ96AP7 390 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 OMA1Q96E52 524 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 RPGRIP1Q96KN7 1286 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 C10orf90Q96M02 699 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 S1PR3Q99500 378 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 SSX3Q99909 188 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 TDRD1Q9BXT4 1180 aaKnown RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 C3orf14Q9HBI5 128 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ZNF624Q9P2J8 865 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-210ENST00000556718 EPHA6Q9UF33 1036 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 POMT2Q9UKY4 750 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 NUDCQ9Y266 331 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 PPP2R2CQ9Y2T4 447 aa3.81□□□□□ -1.8
PRPF39-210ENST00000556718 ZCCHC6Q5VYS8 1495 aaKnown RBP3.8□□□□□ -1.8
PRPF39-210ENST00000556718 GREB1LQ9C091 1923 aaPredicted RBP3.8□□□□□ -1.8
PRPF39-210ENST00000556718 ATP6AP2A0A1C7CYW4 349 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 MTMR11A4FU01 709 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 CCSO14618 274 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 PCDH7O60245 1069 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 AKR7A3O95154 331 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 CPNE6O95741 557 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 APRTP07741 180 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 HMBSP08397 361 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 RALAP11233 206 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 B4GALT1P15291 398 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 RPA1P27694 616 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 PKLRP30613 574 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 HSPA1LP34931 641 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 CDKN1AP38936 164 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 OR3A2P47893 321 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 OR1D5P58170 312 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 SLC26A5P58743 744 aa3.8□□□□□ -1.8
PRPF39-210ENST00000556718 HERV-K104P63124 156 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms