RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 GALNT16Q8N428 558 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 DTWD1Q8N5C7 304 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 TRPC4APQ8TEL6 797 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 TWIST2Q8WVJ9 160 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 WDR60Q8WVS4 1066 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 NACC2Q96BF6 587 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 C19orf60Q96EN9 201 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 VPS50Q96JG6 964 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 PRAP1Q96NZ9 151 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 NSUN5Q96P11 429 aaKnown RBP11.79□□□□□ -0.52
SHMT2-214ENST00000554604 NUDT9Q9BW91 350 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 YIPF2Q9BWQ6 316 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 SOX17Q9H6I2 414 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-214ENST00000554604 ATP13A2Q9NQ11 1180 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 PFDN4Q9NQP4 134 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 CUEDC1Q9NWM3 386 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-214ENST00000554604 ZNF282Q9UDV7 671 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-214ENST00000554604 OARD1Q9Y530 152 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 DNAJC15Q9Y5T4 150 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 HECTD1Q9ULT8 2610 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 SVILO95425 2214 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 E2F3O00716 465 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 HAT1O14929 419 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 PSMG1O95456 288 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 ANXA5P08758 320 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 GCKP35557 465 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 CCNG1P51959 295 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 EMP3P54852 163 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 MLLT10P55197 1068 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 ACTR3P61158 418 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 RELAQ04206 551 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 NAE1Q13564 534 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 MYBPC3Q14896 1274 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 RBBP7Q16576 425 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 PPP1R3AQ16821 1122 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 HKDC1Q2TB90 917 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 PRTGQ2VWP7 1150 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 CDKL4Q5MAI5 379 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 IRAK1BP1Q5VVH5 260 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 AGTRAPQ6RW13 159 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 MBOAT1Q6ZNC8 495 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 C17orf64Q86WR6 236 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 PLD3Q8IV08 490 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 TMEM151BQ8IW70 566 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 LRRC56Q8IYG6 542 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-214ENST00000554604 PRSS58Q8IYP2 241 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 DEFB107AQ8IZN7 70 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 UBTD2Q8WUN7 234 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 STMN2Q93045 179 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 MIEF2Q96C03 454 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 MVB12AQ96EY5 273 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 C10orf90Q96M02 699 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 OR2A5Q96R48 311 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 ZNF382Q96SR6 550 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 SPSB2Q99619 263 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 CCT7Q99832 543 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 CRB3Q9BUF7 120 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 ATG10Q9H0Y0 220 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 EFCAB1Q9HAE3 211 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 SEMA4BQ9NPR2 832 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-214ENST00000554604 SEMA3GQ9NS98 782 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 TMEM184CQ9NVA4 438 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 ARL15Q9NXU5 204 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 FBXL4Q9UKA2 621 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 RUVBL1Q9Y265 456 aaKnown RBP11.78□□□□□ -0.52
SHMT2-214ENST00000554604 L3MBTL1Q9Y468 752 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 SHANK1Q9Y566 2161 aa11.78□□□□□ -0.52
SHMT2-214ENST00000554604 COL12A1Q99715 3063 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 PSMD12O00232 456 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-214ENST00000554604 PPP6CO00743 305 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 PIP5K1BO14986 540 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 MED26O95402 600 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 CHEK2O96017 543 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 ZGLP1P0C6A0 271 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 UROSP10746 265 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 GNAZP19086 355 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 ITGA3P26006 1051 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 GRK3P35626 688 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 MRPL19P49406 292 aaKnown RBP11.77□□□□□ -0.53
SHMT2-214ENST00000554604 AGTR2P50052 363 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 NUDT2P50583 147 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 AP1S2P56377 157 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 RPS15AP62244 130 aaKnown RBP11.77□□□□□ -0.53
SHMT2-214ENST00000554604 FOXK1P85037 733 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 KLC1Q07866 573 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 TBL3Q12788 808 aaKnown RBP11.77□□□□□ -0.53
SHMT2-214ENST00000554604 AIMP2Q13155 320 aaKnown RBP11.77□□□□□ -0.53
SHMT2-214ENST00000554604 STX5Q13190 355 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 DSG2Q14126 1118 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 NDUFA9Q16795 377 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 PHKG1Q16816 387 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 NADK2Q4G0N4 442 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 SWT1Q5T5J6 900 aaKnown RBP11.77□□□□□ -0.53
SHMT2-214ENST00000554604 GARNL3Q5VVW2 1013 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 SULT1C3Q6IMI6 304 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 CAPN13Q6MZZ7 669 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-214ENST00000554604 OGFOD2Q6N063 350 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 AAGABQ6PD74 315 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 RIPOR1Q6ZS17 1223 aa11.77□□□□□ -0.53
SHMT2-214ENST00000554604 GPRIN3Q6ZVF9 776 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms