RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 LMNAP02545 664 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 UGT2B7P16662 529 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ENGP17813 658 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 EPORP19235 508 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ZNF10P21506 573 aaPredicted RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 RPL3P39023 403 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 MC3RP41968 323 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 GRIA3P42263 894 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 GRK6P43250 576 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 TSFMP43897 325 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ASMTP46597 345 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 RAP1GDS1P52306 607 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 FOXA1P55317 472 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 MAZP56270 477 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 STXBP1P61764 594 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 SKP1P63208 163 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 CSNK1G2P78368 415 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 REEP5Q00765 189 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 BNC1Q01954 994 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 RGS1Q08116 209 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ACSM2AQ08AH3 577 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 SF3A3Q12874 501 aaKnown RBP eCLIP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 CUL3Q13618 768 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 SQLEQ14534 574 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 NR1D2Q14995 579 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 KRT72Q14CN4 511 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ABRAXAS2Q15018 415 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 LPAL2Q16609 132 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ZSCAN26Q16670 478 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 NDUFA9Q16795 377 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 GALNTL6Q49A17 601 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 TMEM35AQ53FP2 167 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 SPIN4Q56A73 249 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 XKR7Q5GH72 579 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 C6orf136Q5SQH8 315 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 DEPDC1Q5TB30 811 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 KIAA1614Q5VZ46 1190 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 FAM91A1Q658Y4 838 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ACSM2BQ68CK6 577 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 TMEM71Q6P5X7 295 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 CYB5D1Q6P9G0 228 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 WDR74Q6RFH5 385 aaPredicted RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 SCIMPQ6UWF3 145 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 Q6ZSR9 355 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 KANSL1Q7Z3B3 1105 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 YTHDF3Q7Z739 585 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 MTDHQ86UE4 582 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ZFAND4Q86XD8 727 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 KMT5CQ86Y97 462 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 MIER2Q8N344 545 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 MINDY1Q8N5J2 469 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 EID2Q8N6I1 236 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 NATD1Q8N6N6 113 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 LINC01555Q8NAE3 123 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 MFSD9Q8NBP5 474 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 CAMKVQ8NCB2 501 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 GLB1L3Q8NCI6 653 aaPredicted RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 C7orf57Q8NEG2 295 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 HUS1BQ8NHY5 278 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 PATE1Q8WXA2 126 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 NCSTNQ92542 709 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 N4BP2L2Q92802 583 aaPredicted RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ATOH1Q92858 354 aaPredicted RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 RERGQ96A58 199 aaPredicted RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 RGMAQ96B86 450 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 NSL1Q96IY1 281 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 PPP1R36Q96LQ0 422 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 APOLD1Q96LR9 279 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 KCNA7Q96RP8 456 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ZBTB18Q99592 522 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 PRPF18Q99633 342 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 EBF4Q9BQW3 602 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 SPATA25Q9BR10 227 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 LRFN3Q9BTN0 628 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 TBC1D10AQ9BXI6 508 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 TWSG1Q9GZX9 223 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 CHRNA10Q9GZZ6 450 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 WDR55Q9H6Y2 383 aaPredicted RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 LRTM1Q9HBL6 345 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 PDE7BQ9NP56 450 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 TXLNGQ9NUQ3 528 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 UCKL1Q9NWZ5 548 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 NDE1Q9NXR1 346 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ASIC5Q9NY37 505 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ZIM2Q9NZV7 527 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 NCDNQ9UBB6 729 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 ADAM29Q9UKF5 820 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 SLC12A4Q9UP95 1085 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 BTRCQ9Y297 605 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 KLK4Q9Y5K2 254 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 RNF215Q9Y6U7 377 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 CAPN7Q9Y6W3 813 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 R4GN57 208 aa4.78□□□□□ -1.64
VTI1B-202ENST00000553619 RANBP2P49792 3224 aaKnown RBP4.78□□□□□ -1.64
VTI1B-202ENST00000553619 MDC1Q14676 2089 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 KMT2EQ8IZD2 1858 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 UNC13CQ8NB66 2214 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 IGHV1OR21-1A0A087WYE8 117 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PRAMEF33A0A0G2JMD5 474 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ATP6AP2A0A1C7CYW4 349 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms