RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 DGKEP52429 567 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 ACLYP53396 1101 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 SNRPGP62308 76 aaKnown RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 SLC5A12Q1EHB4 618 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 ARL14EPQ8N8R7 260 aaPredicted RBP16.78■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF461Q8TAF7 563 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 SLC22A4Q9H015 551 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 C11orf16Q9NQ32 467 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 TIGARQ9NQ88 270 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 CLEC2DQ9UHP7 191 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 KLHL20Q9Y2M5 609 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 BACE2Q9Y5Z0 518 aa16.78■□□□□ 0.28
SYNE3-202ENST00000553340 IQCMA0A1B0GVH7 501 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 PCBP3P57721 371 aaKnown RBP16.77■□□□□ 0.28
SYNE3-202ENST00000553340 TAB1Q15750 504 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF770Q6IQ21 691 aaPredicted RBP16.77■□□□□ 0.28
SYNE3-202ENST00000553340 LAS2Q8IYD9 372 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 OR9Q1Q8NGQ5 310 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 OR5AK3PQ8NH89 298 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 CIDECQ96AQ7 238 aaPredicted RBP16.77■□□□□ 0.28
SYNE3-202ENST00000553340 VOPP1Q96AW1 172 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 PPCDCQ96CD2 204 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 TTYH2Q9BSA4 534 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 MND1Q9BWT6 205 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 CLEC4EQ9ULY5 219 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 SSR3Q9UNL2 185 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 DSPPQ9NZW4 1301 aa16.77■□□□□ 0.28
SYNE3-202ENST00000553340 GPR37L1O60883 481 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 SRCP12931 536 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 CD70P32970 193 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 ZNF157P51786 506 aaPredicted RBP16.77■□□□□ 0.27
SYNE3-202ENST00000553340 NCF4Q15080 339 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 LRRC73Q5JTD7 316 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 KIAA1841Q6NSI8 718 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 MED27Q6P2C8 311 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 FAM92BQ6ZTR7 304 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.77■□□□□ 0.27
SYNE3-202ENST00000553340 RAVER1Q8IY67 606 aaKnown RBP16.77■□□□□ 0.27
SYNE3-202ENST00000553340 MRPL9Q9BYD2 267 aaKnown RBP16.77■□□□□ 0.27
SYNE3-202ENST00000553340 POLR2J2Q9GZM3 115 aaKnown RBP16.77■□□□□ 0.27
SYNE3-202ENST00000553340 TRIM39Q9HCM9 518 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 PAQR5Q9NXK6 330 aaPredicted RBP16.77■□□□□ 0.27
SYNE3-202ENST00000553340 B4GALT6Q9UBX8 382 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 SNX7Q9UNH6 387 aa16.77■□□□□ 0.27
SYNE3-202ENST00000553340 HYKKA2RU49 373 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 CCDC182A6NF36 153 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 ADAP00813 363 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 CATP04040 527 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 ARAFP10398 606 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 STK19P49842 368 aaPredicted RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 DAB2P98082 770 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 SLAMF1Q13291 335 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 FAM217AQ8IXS0 508 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 DBF4BQ8NFT6 615 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 REPS1Q96D71 796 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 WRAP53Q9BUR4 548 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 ARHGAP39Q9C0H5 1083 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 NDUFB11Q9NX14 153 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 DNAJC27Q9NZQ0 273 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 BOLA1Q9Y3E2 137 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 KCNE2Q9Y6J6 123 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 OR2AG2A6NM03 316 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 ZNF197O14709 1029 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 GBAP04062 536 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 CYP17A1P05093 508 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 FURINP09958 794 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 OSMP13725 252 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 ITGB7P26010 798 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 RPL3P39023 403 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 CRHR2Q13324 411 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 ASAH1Q13510 395 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 C1DQ13901 141 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 LARS2Q15031 903 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 LEXMQ3ZCV2 418 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 CCSMST1Q4G0I0 132 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 SYTL3Q4VX76 610 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 FAM131AQ6UXB0 335 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 OTOP2Q7RTS6 562 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 TMEM150AQ86TG1 271 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 NPAS4Q8IUM7 802 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 OR56A3Q8NH54 315 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 TRMT61AQ96FX7 289 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 UCK2Q9BZX2 261 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 MMP28Q9H239 520 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 ZDHHC6Q9H6R6 413 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 RC3H2Q9HBD1 1191 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 KCND3Q9UK17 655 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 TMCC3Q9ULS5 477 aa16.76■□□□□ 0.27
SYNE3-202ENST00000553340 RPL36Q9Y3U8 105 aaKnown RBP16.76■□□□□ 0.27
SYNE3-202ENST00000553340 FAM227AF5H4B4 570 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 SGTAO43765 313 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 AP2A2O94973 939 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 SLC16A8O95907 504 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 YES1P07947 543 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 SOAT1P35610 550 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 CTSOP43234 321 aaPredicted RBP16.75■□□□□ 0.27
SYNE3-202ENST00000553340 MC1RQ01726 317 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 C2orf80Q0P641 193 aa16.75■□□□□ 0.27
SYNE3-202ENST00000553340 COMMD6Q7Z4G1 85 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms