RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 RTCAO00442 366 aaKnown RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 CLDN4O14493 209 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 FCHO1O14526 889 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 CTNSO60931 367 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 ITGA10O75578 1167 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 HTR1EP28566 365 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 PTGER1P34995 402 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 SPRP35270 261 aaPredicted RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 RFC3P40938 356 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 CASP2P42575 452 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 NR0B1P51843 470 aaKnown RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 MTTPP55157 894 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 CASP6P55212 293 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 IRF8Q02556 426 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 GUCY2DQ02846 1103 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 E2F2Q14209 437 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 EFTUD2Q15029 972 aaKnown RBP eCLIP12.43□□□□□ -0.422e-6■□□□□ 9.3
CPSF6-204ENST00000547486 TBCCQ15814 346 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 MTFR2Q6P444 385 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 RPTNQ6XPR3 784 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 SYT10Q6XYQ8 523 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 ZNF793Q6ZN11 406 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 BNC2Q6ZN30 1099 aaPredicted RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 CCDC25Q86WR0 208 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 DOLPP1Q86YN1 238 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 ZNF595Q8IYB9 648 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 ZNF321PQ8N8H1 164 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 FAM98AQ8NCA5 519 aaKnown RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 STAG3L4Q8TBR4 150 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 ZNF473Q8WTR7 871 aaKnown RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 PTPMT1Q8WUK0 201 aaPredicted RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 SREK1Q8WXA9 508 aaKnown RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 ANP32BQ92688 251 aaKnown RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 VMP1Q96GC9 406 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 MAGED4Q96JG8 741 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 PHF12Q96QT6 1004 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 ATOH8Q96SQ7 321 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 EFCAB11Q9BUY7 163 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 MEMO1Q9Y316 297 aa12.43□□□□□ -0.42
CPSF6-204ENST00000547486 UTP11Q9Y3A2 253 aaKnown RBP12.43□□□□□ -0.42
CPSF6-204ENST00000547486 LRBAP50851 2863 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 A0A088AWK7 358 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 HMX2A2RU54 273 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 UBXN8O00124 270 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ADAM10O14672 748 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 PEX1O43933 1283 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 SH3BGRLO75368 114 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 OR2J2O76002 312 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 MLYCDO95822 493 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ESRRAP11474 423 aaPredicted RBP12.42□□□□□ -0.42
CPSF6-204ENST00000547486 MTHFD2P13995 350 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ZNF24P17028 368 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 TFEBP19484 476 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ZNF10P21506 573 aaPredicted RBP12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ATP5A1P25705 553 aaKnown RBP12.42□□□□□ -0.42
CPSF6-204ENST00000547486 CASQ1P31415 396 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 MSH2P43246 934 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 MEOX1P50221 254 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 LAPTM5Q13571 262 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 HIST2H2ACQ16777 129 aaPredicted RBP12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ZNF630Q2M218 657 aaPredicted RBP12.42□□□□□ -0.42
CPSF6-204ENST00000547486 HIST2H2AA3Q6FI13 130 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 XKRXQ6PP77 449 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 C3P1Q6ZMU1 363 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 RAPH1Q70E73 1250 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 MCEMP1Q8IX19 187 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 TMEM156Q8N614 296 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 TMEM125Q96AQ2 219 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 NXNL1Q96CM4 212 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 MAPKAP1Q9BPZ7 522 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ALOXE3Q9BYJ1 711 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 ADAP2Q9NPF8 381 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 VTI1BQ9UEU0 232 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 HRH3Q9Y5N1 445 aa12.42□□□□□ -0.42
CPSF6-204ENST00000547486 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.42□□□□□ -0.42
CPSF6-204ENST00000547486 FBN2P35556 2912 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 ESYT3A0FGR9 886 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 SAP18O00422 153 aaKnown RBP12.41□□□□□ -0.42
CPSF6-204ENST00000547486 LDB3O75112 727 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 ZFAND5O76080 213 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 TGFB1P01137 390 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 S100BP04271 92 aaPredicted RBP12.41□□□□□ -0.42
CPSF6-204ENST00000547486 IFNA16P05015 189 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 SNRPB2P08579 225 aaKnown RBP12.41□□□□□ -0.42
CPSF6-204ENST00000547486 TNFRSF8P28908 595 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 GPR85P60893 370 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 ETF1P62495 437 aaKnown RBP12.41□□□□□ -0.42
CPSF6-204ENST00000547486 IRF9Q00978 393 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 SLC7A5Q01650 507 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 ID2Q02363 134 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 CAV1Q03135 178 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 PCDH1Q08174 1060 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 BMPR2Q13873 1038 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 SLMAPQ14BN4 828 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 ELAVL1Q15717 326 aaKnown RBP12.41□□□□□ -0.42
CPSF6-204ENST00000547486 PAGE2BQ5JRK9 111 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 UBAP2Q5T6F2 1119 aaKnown RBP12.41□□□□□ -0.42
CPSF6-204ENST00000547486 LRRC70Q7Z2Q7 622 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 LAS2Q8IYD9 372 aa12.41□□□□□ -0.42
CPSF6-204ENST00000547486 CYP4Z2PQ8N1L4 340 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms