RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 PSD3Q9NYI0 1048 aa14.75□□□□□ -0.05
CCDC78-216ENST00000544996 ABI3Q9P2A4 366 aa14.75□□□□□ -0.05
CCDC78-216ENST00000544996 CSAG2Q9Y5P2 127 aa14.75□□□□□ -0.05
CCDC78-216ENST00000544996 GCN1Q92616 2671 aaKnown RBP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 BLACEA4D250 179 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 FOXE1O00358 373 aaPredicted RBP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 RTCAO00442 366 aaKnown RBP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 CYR61O00622 381 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SCELO95171 688 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SHBGP04278 402 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 RPS17P08708 135 aaKnown RBP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SBK3P0C264 359 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 KRT15P19012 456 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SLCO1A2P46721 670 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 HERVK_113P63132 956 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 CUL3Q13618 768 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 FRG2Q64ET8 278 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 H3F3CQ6NXT2 135 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 ZNF793Q6ZN11 406 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 TDRPQ86YL5 185 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SLC22A9Q8IVM8 553 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SCUBE1Q8IWY4 988 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 RNF175Q8N4F7 328 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 GALNT11Q8NCW6 608 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SNRNP40Q96DI7 357 aaKnown RBP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 NSUN5Q96P11 429 aaKnown RBP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 FRG2BQ96QU4 278 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 C1QTNF3Q9BXJ4 246 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 ERVK-6Q9BXR3 956 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 SLC29A3Q9BZD2 475 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 RNF32Q9H0A6 362 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 MS4A12Q9NXJ0 267 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 PLA2G3Q9NZ20 509 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 PCDHGA10Q9Y5H3 936 aa14.74□□□□□ -0.05
CCDC78-216ENST00000544996 COPG1Q9Y678 874 aaKnown RBP14.74□□□□□ -0.05
CCDC78-216ENST00000544996 HELZ2Q9BYK8 2649 aaKnown RBP14.73□□□□□ -0.05
CCDC78-216ENST00000544996 TRAV17A0A0B4J275 112 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 SAGE2PA6NJ88 616 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 SMIM23A6NLE4 172 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 A8MUA0 341 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 ESPNB1AK53 854 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 CTNSO60931 367 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 CPN2P22792 545 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 ATP5F1P24539 256 aaPredicted RBP14.73□□□□□ -0.05
CCDC78-216ENST00000544996 CCT5P48643 541 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 NEK2P51955 445 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 VSNL1P62760 191 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 STX4Q12846 297 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 IFT88Q13099 833 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 TRAF3Q13114 568 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 SLAMF1Q13291 335 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 RASA2Q15283 850 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 TERF2Q15554 542 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 MEP1AQ16819 746 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 GGTA1PQ4G0N0 100 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 PRR30Q53SZ7 412 aaPredicted RBP14.73□□□□□ -0.05
CCDC78-216ENST00000544996 ACER2Q5QJU3 275 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 CLNKQ7Z7G1 428 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 ZCCHC7Q8N3Z6 543 aaKnown RBP14.73□□□□□ -0.05
CCDC78-216ENST00000544996 AMER2Q8N7J2 671 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 CATSPER1Q8NEC5 780 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 C7orf57Q8NEG2 295 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 OR1N1Q8NGS0 311 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 SUN3Q8TAQ9 357 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 WDR20Q8TBZ3 569 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 ZNF483Q8TF39 744 aaPredicted RBP14.73□□□□□ -0.05
CCDC78-216ENST00000544996 MZB1Q8WU39 189 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 SERPINI1Q99574 410 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 MAPKAP1Q9BPZ7 522 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 ELOVL6Q9H5J4 265 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 ZBTB26Q9HCK0 441 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 PNO1Q9NRX1 252 aaKnown RBP14.73□□□□□ -0.05
CCDC78-216ENST00000544996 AGPAT4Q9NRZ5 378 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 KCMF1Q9P0J7 381 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 PHF11Q9UIL8 331 aa14.73□□□□□ -0.05
CCDC78-216ENST00000544996 BAHCC1Q9P281 2608 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 A0A1W2PPM1 405 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 OR5H15A6NDH6 313 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 PLPP1O14494 284 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 DLX3O60479 287 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 CDH16O75309 829 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 GLRA3O75311 464 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 MYO1DO94832 1006 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 SUPT7LO94864 414 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 WDPCPO95876 746 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 IFNA16P05015 189 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 TLX1P31314 330 aaPredicted RBP14.72□□□□□ -0.05
CCDC78-216ENST00000544996 HSD17B3P37058 310 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 TNFSF10P50591 281 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 HNRNPFP52597 415 aaKnown RBP14.72□□□□□ -0.05
CCDC78-216ENST00000544996 CDH13P55290 713 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 TMEM52Q8NDY8 209 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 B3GNT7Q8NFL0 401 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 OR4F6Q8NGB9 312 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 ELP5Q8TE02 316 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 MTFMTQ96DP5 389 aaKnown RBP14.72□□□□□ -0.05
CCDC78-216ENST00000544996 CSF3RQ99062 836 aa14.72□□□□□ -0.05
CCDC78-216ENST00000544996 SORBS1Q9BX66 1292 aaKnown RBP14.72□□□□□ -0.05
CCDC78-216ENST00000544996 ADAP2Q9NPF8 381 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms