RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TP53INP1Q96A56 240 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 TMEM159Q96B96 161 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 PPP1R16AQ96I34 528 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 VPS35Q96QK1 796 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 TP63Q9H3D4 680 aaPredicted RBP13.13□□□□□ -0.31
VPS33A-208ENST00000543633 FAM83DQ9H4H8 585 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 NMNAT1Q9HAN9 279 aaPredicted RBP13.13□□□□□ -0.31
VPS33A-208ENST00000543633 RC3H2Q9HBD1 1191 aaKnown RBP13.13□□□□□ -0.31
VPS33A-208ENST00000543633 HHATLQ9HCP6 504 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 SPATA7Q9P0W8 599 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 SLC25A13Q9UJS0 675 aa13.13□□□□□ -0.31
VPS33A-208ENST00000543633 HELZP42694 1942 aaKnown RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 SLC5A10A0PJK1 596 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 UPK3BL1B0FP48 263 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 UPK3BL2E5RIL1 263 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ZNF670-ZNF695F2Z2N8 137 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 PCDH17O14917 1159 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 GPX5O75715 221 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 LGI1O95970 557 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 TNFRSF1BP20333 461 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 OR1E2P47887 323 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 THOC7Q6I9Y2 204 aaKnown RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ZNF852Q6ZMS4 543 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ZNF517Q6ZMY9 492 aaPredicted RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 RAVER1Q8IY67 606 aaKnown RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 SLC7A5P1Q8MH63 180 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 TAGAPQ8N103 731 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 MED8Q96G25 268 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 DHRS1Q96LJ7 313 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 FOPNLQ96NB1 174 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ZSCAN5AQ9BUG6 496 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 MND1Q9BWT6 205 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ASPNQ9BXN1 380 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ZDHHC6Q9H6R6 413 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ZNF334Q9HCZ1 680 aaPredicted RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 STUB1Q9UNE7 303 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ICKQ9UPZ9 632 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 MGAT4BQ9UQ53 548 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 CAB39Q9Y376 341 aaPredicted RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 INSL5Q9Y5Q6 135 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 PCM1Q15154 2024 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 PRAMEF33A0A0G2JMD5 474 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 PRRG1O14668 218 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 PRAMEF10O60809 474 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 OSMP13725 252 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 DDX5P17844 614 aaKnown RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 CNR2P34972 360 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 CHI3L1P36222 383 aaPredicted RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 NR4A2P43354 598 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 PRLHRP49683 370 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 RORCP51449 518 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 CRISP3P54108 245 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 CYP4F2P78329 520 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ILKQ13418 452 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 ATAD3CQ5T2N8 411 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 HENMT1Q5T8I9 393 aaKnown RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 C12orf73Q69YU5 71 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 TMPRSS11AQ6ZMR5 421 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 COMMD6Q7Z4G1 85 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 RAB43Q86YS6 212 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 NATD1Q8N6N6 113 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 GPR156Q8NFN8 814 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 OR9Q1Q8NGQ5 310 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 LILRB4Q8NHJ6 448 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 APOBEC4Q8WW27 367 aaKnown RBP13.12□□□□□ -0.31
VPS33A-208ENST00000543633 BHMTQ93088 406 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 TMEM245Q9H330 911 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 DMRT3Q9NQL9 472 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 NDUFB11Q9NX14 153 aa13.12□□□□□ -0.31
VPS33A-208ENST00000543633 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 TRBC2A0A5B9 178 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 TSPAN11A1L157 253 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 HYKKA2RU49 373 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 KRT87PA6NCN2 255 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 TLR4O00206 839 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 NPC1O15118 1278 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 GRM6O15303 877 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 ATG13O75143 517 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 PSMA1P25786 263 aaKnown RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 STK19P49842 368 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 DSTNP60981 165 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 PSPHP78330 225 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 SEMG2Q02383 582 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 MLLT11Q13015 90 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 SF1Q15637 639 aaKnown RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 CARTPTQ16568 116 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 TXNDC8Q6A555 127 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 GDPD4Q6W3E5 623 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 CLIP4Q8N3C7 705 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 OR4K1Q8NGD4 311 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 C16orf78Q8WTQ4 265 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 GTPBP3Q969Y2 492 aaKnown RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 KIAA1143Q96AT1 154 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 TMEM80Q96HE8 168 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 PKP4Q99569 1192 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 WRAP53Q9BUR4 548 aaKnown RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 UCK2Q9BZX2 261 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 MRPL17Q9NRX2 175 aaKnown RBP13.11□□□□□ -0.31
VPS33A-208ENST00000543633 CLEC4EQ9ULY5 219 aa13.11□□□□□ -0.31
VPS33A-208ENST00000543633 RPL36Q9Y3U8 105 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms