RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 IKZF2Q9UKS7 526 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 POFUT2Q9Y2G5 429 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 PCDHGA8Q9Y5G5 932 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 ARID1AO14497 2285 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 C1QTNF3-AMACRE9PGA6 284 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 AREL1O15033 823 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 GMFGO60234 142 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 C6orf47O95873 294 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 RPS17P08708 135 aaKnown RBP9.59□□□□□ -0.87
TRAF1-202ENST00000540010 TNFRSF1BP20333 461 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 POLR2IP36954 125 aaKnown RBP9.59□□□□□ -0.87
TRAF1-202ENST00000540010 BDKRB1P46663 353 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 PSMD4P55036 377 aaKnown RBP9.59□□□□□ -0.87
TRAF1-202ENST00000540010 DCDC1P59894 354 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 DSTNP60981 165 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 TUBA1BP68363 451 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 TXNL4AP83876 142 aaKnown RBP9.59□□□□□ -0.87
TRAF1-202ENST00000540010 FAM180BQ6P0A1 224 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 LETMD1Q6P1Q0 360 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 LARP4Q71RC2 724 aaKnown RBP eCLIP9.59□□□□□ -0.87
TRAF1-202ENST00000540010 TUBA1AQ71U36 451 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 THOC6Q86W42 341 aaKnown RBP9.59□□□□□ -0.87
TRAF1-202ENST00000540010 ZFAND4Q86XD8 727 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 OR8H3Q8N146 312 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 DTX3Q8N9I9 347 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 ZNF675Q8TD23 568 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 OR8D1Q8WZ84 308 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 NPLQ9BXD5 320 aaPredicted RBP9.59□□□□□ -0.87
TRAF1-202ENST00000540010 IRF2BPLQ9H1B7 796 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 SLC28A3Q9HAS3 691 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 BEX1Q9HBH7 125 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 ARMC1Q9NVT9 282 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 HSPB11Q9Y547 144 aa9.59□□□□□ -0.87
TRAF1-202ENST00000540010 TSPAN12O95859 305 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 PDYNP01213 254 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 C1SP09871 688 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ALPPL2P10696 532 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ZNF10P21506 573 aaPredicted RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 GPX3P22352 226 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 GUCA1AP43080 201 aaPredicted RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 INHBCP55103 352 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ZNF805Q5CZA5 627 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 KANK2Q63ZY3 851 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 IKBIPQ70UQ0 350 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 NPAS3Q8IXF0 933 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 MINDY2Q8NBR6 621 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 KCT2Q8NC54 265 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 OR8J3Q8NGG0 315 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 UFD1Q92890 307 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 TMEM125Q96AQ2 219 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 MAELQ96JY0 434 aaKnown RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 KCTD7Q96MP8 289 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 SAMD11Q96NU1 681 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 FEVQ99581 238 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 GINS4Q9BRT9 223 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 WACQ9BTA9 647 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 TMED9Q9BVK6 235 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ASPNQ9BXN1 380 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 SLC22A4Q9H015 551 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 MSRAQ9UJ68 235 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ANAPC1Q9H1A4 1944 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 MYOFQ9NZM1 2061 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 PI15O43692 258 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 PRNPP04156 253 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 EPHX1P07099 455 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 FGF4P08620 206 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ALDOCP09972 364 aaKnown RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ATP1B2P14415 290 aaPredicted RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 HK3P52790 923 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 NPRL3Q12980 569 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 CAMK1Q14012 370 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ZNHIT3Q15649 155 aaPredicted RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 PRSS36Q5K4E3 855 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ZNF648Q5T619 568 aaPredicted RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 RNF130Q86XS8 419 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 SLC22A15Q8IZD6 547 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 SNX33Q8WV41 574 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 SMARCD2Q92925 531 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 MAL2Q969L2 176 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ZNF707Q96C28 371 aaPredicted RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 TUBA1CQ9BQE3 449 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 MMP27Q9H306 513 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 SFXN1Q9H9B4 322 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ADAP2Q9NPF8 381 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 CLCA3PQ9Y6N3 262 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 HEPACAM2A8MVW5 462 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 FAM25EA8MYX2 175 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 TSPAN4O14817 238 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 VILLO15195 856 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 PDPK1O15530 556 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 CHST10O43529 356 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 FCER2P06734 321 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 H1F0P07305 194 aaKnown RBP9.58□□□□□ -0.88
TRAF1-202ENST00000540010 CD1EP15812 388 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 ARPC4P59998 168 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 FAM78AQ5JUQ0 283 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 TMEM215Q68D42 235 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 HACD2Q6Y1H2 254 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 FAM92BQ6ZTR7 304 aa9.58□□□□□ -0.88
TRAF1-202ENST00000540010 HSD11B1LQ7Z5J1 315 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms