RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 HSD17B7P56937 341 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 ZNF844Q08AG5 666 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 DDX39BQ13838 428 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 SFT2D3Q587I9 215 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 MFSD4BQ5TF39 518 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 FAM219BQ5XKK7 198 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 MRM1Q6IN84 353 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 H3F3CQ6NXT2 135 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 JMJD6Q6NYC1 403 aaPredicted RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 ZNF605Q86T29 641 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 ZNF595Q8IYB9 648 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 ZCCHC7Q8N3Z6 543 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 NFAM1Q8NET5 270 aaPredicted RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 ADAMTS18Q8TE60 1221 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 CCDC126Q96EE4 140 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 MAGEB10Q96LZ2 347 aaPredicted RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 PTCHD1Q96NR3 888 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 CSF3RQ99062 836 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 MAPKAP1Q9BPZ7 522 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 SORBS1Q9BX66 1292 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 DDX31Q9H8H2 851 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 FARSBQ9NSD9 589 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 OXSMQ9NWU1 459 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 TRPS1Q9UHF7 1281 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 G3BP2Q9UN86 482 aaKnown RBP12.18□□□□□ -0.46
VPS28-216ENST00000533806 PLLPQ9Y342 182 aa12.18□□□□□ -0.46
VPS28-216ENST00000533806 NUP210LQ5VU65 1888 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 A0A0A6YYD5 115 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 PSMD12O00232 456 aaPredicted RBP12.17□□□□□ -0.46
VPS28-216ENST00000533806 DPM1O60762 260 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 EEDO75530 441 aaKnown RBP12.17□□□□□ -0.46
VPS28-216ENST00000533806 SORBS2O94875 1100 aaKnown RBP12.17□□□□□ -0.46
VPS28-216ENST00000533806 OR4F21O95013 312 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 MLYCDO95822 493 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 ALPPP05187 535 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 MYL2P10916 166 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 ITGAMP11215 1152 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 PLA2G2AP14555 144 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 CPA3P15088 417 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 OR4D2P58180 307 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 IFFO1Q0D2I5 559 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 LCP2Q13094 533 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 AP5B1Q2VPB7 878 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 NADK2Q4G0N4 442 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 TNFAIP8L3Q5GJ75 292 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 AGAP7PQ5VUJ5 663 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 FAM47BQ8NA70 645 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 TEX19Q8NA77 164 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 Q8NA96 180 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 M1APQ8TC57 530 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 MTFMTQ96DP5 389 aaKnown RBP12.17□□□□□ -0.46
VPS28-216ENST00000533806 APOPT1Q96IL0 206 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 AGAP4Q96P64 663 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 LMF1Q96S06 567 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 SERPINI1Q99574 410 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 PPIEQ9UNP9 301 aaKnown RBP12.17□□□□□ -0.46
VPS28-216ENST00000533806 ASB4Q9Y574 426 aa12.17□□□□□ -0.46
VPS28-216ENST00000533806 PROM1O43490 865 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 TYROBPO43914 113 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 TMPRSS11DO60235 418 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 CTNSO60931 367 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 SEMA3DO95025 777 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 PDYNP01213 254 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 CREB1P16220 341 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 SSR2P43308 183 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 GPR143P51810 404 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 NAGLUP54802 743 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 PKNOX1P55347 436 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 PHEXP78562 749 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 TBL3Q12788 808 aaKnown RBP12.16□□□□□ -0.46
VPS28-216ENST00000533806 IFT88Q13099 833 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 SLAMF1Q13291 335 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 MFAP5Q13361 173 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 TERF2Q15554 542 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 EXT1Q16394 746 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 CRB2Q5IJ48 1285 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 SLC6A19Q695T7 634 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 PAPD4Q6PIY7 484 aaKnown RBP12.16□□□□□ -0.46
VPS28-216ENST00000533806 ATG14Q6ZNE5 492 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 Q6ZS92 163 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 FRMD7Q6ZUT3 714 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 SRRM1Q8IYB3 904 aaKnown RBP12.16□□□□□ -0.46
VPS28-216ENST00000533806 BRIX1Q8TDN6 353 aaKnown RBP12.16□□□□□ -0.46
VPS28-216ENST00000533806 ELP5Q8TE02 316 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 PPP4R1Q8TF05 950 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 AGAP11Q8TF27 550 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 ANKRD9Q96BM1 317 aaPredicted RBP12.16□□□□□ -0.46
VPS28-216ENST00000533806 LPAR4Q99677 370 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 SLC29A3Q9BZD2 475 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 EPN3Q9H201 632 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 COPS7BQ9H9Q2 264 aaPredicted RBP12.16□□□□□ -0.46
VPS28-216ENST00000533806 BRF2Q9HAW0 419 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 MMP25Q9NPA2 562 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 MS4A12Q9NXJ0 267 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 STK38LQ9Y2H1 464 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 ATG4BQ9Y4P1 393 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 FLNCQ14315 2725 aa12.16□□□□□ -0.46
VPS28-216ENST00000533806 SERTM1A2A2V5 107 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 BLACEA4D250 179 aa12.15□□□□□ -0.46
VPS28-216ENST00000533806 MANBAO00462 879 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms