RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GPLD1P80108 840 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 FLOT2Q14254 428 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 SNCBQ16143 134 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 TCTN2Q96GX1 697 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 PPM1MQ96MI6 270 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 CCDC115Q96NT0 180 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 FAIM2Q9BWQ8 316 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 SORBS1Q9BX66 1292 aaKnown RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 NLNQ9BYT8 704 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 PAIP1Q9H074 479 aaKnown RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 KLHL31Q9H511 634 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 PRDM7Q9NQW5 492 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 EXO1Q9UQ84 846 aaKnown RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 RFPL3O75679 317 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 BCAS2O75934 225 aaPredicted RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 ANP32DO95626 131 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 PERM1Q5SV97 790 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 IRGCQ6NXR0 463 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 AAGABQ6PD74 315 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 ABHD13Q7L211 337 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 RNF148Q8N7C7 305 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 C19orf47Q8N9M1 422 aaKnown RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 CCDC74AQ96AQ1 378 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 AHCYL2Q96HN2 611 aaKnown RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 TRAPPC9Q96Q05 1148 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 TEFMQ96QE5 360 aaKnown RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 PANX1Q96RD7 426 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 AICDAQ9GZX7 198 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 CHRNA10Q9GZZ6 450 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 ALG2Q9H553 416 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 COPS7BQ9H9Q2 264 aaPredicted RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 VAPAQ9P0L0 249 aa20.13■□□□□ 0.81
VPS28-212ENST00000530836 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.13■□□□□ 0.81
VPS28-212ENST00000530836 SNRNP200O75643 2136 aaKnown RBP20.12■□□□□ 0.81
VPS28-212ENST00000530836 TRBV5-3A0A0A0MS03 114 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 TXNDC9O14530 226 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 MAP3K7O43318 606 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 FAM58BPP0C7Q3 252 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 ZCCHC18P0CG32 403 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 CDK4P11802 303 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 PVRP15151 417 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 ATP5A1P25705 553 aaKnown RBP20.12■□□□□ 0.81
VPS28-212ENST00000530836 RUNDC3AQ59EK9 446 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 ACOT4Q8N9L9 421 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 RNPEPL1Q9HAU8 725 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 LYARQ9NX58 379 aaKnown RBP20.12■□□□□ 0.81
VPS28-212ENST00000530836 EHD3Q9NZN3 535 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 PACSIN3Q9UKS6 424 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 PCDHGB4Q9UN71 923 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 PCDHB14Q9Y5E9 798 aa20.12■□□□□ 0.81
VPS28-212ENST00000530836 TLCD2A6NGC4 264 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 H0YGG7 62 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 ACOT8O14734 319 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 TMPRSS11DO60235 418 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 SRPX2O60687 465 aaPredicted RBP20.11■□□□□ 0.81
VPS28-212ENST00000530836 SORBS2O94875 1100 aaKnown RBP20.11■□□□□ 0.81
VPS28-212ENST00000530836 ST6GAL1P15907 406 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 TCN1P20061 433 aaPredicted RBP20.11■□□□□ 0.81
VPS28-212ENST00000530836 ARF3P61204 181 aaPredicted RBP20.11■□□□□ 0.81
VPS28-212ENST00000530836 E2F1Q01094 437 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 CCDC157Q569K6 752 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 RABL3Q5HYI8 236 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 MRM1Q6IN84 353 aaKnown RBP20.11■□□□□ 0.81
VPS28-212ENST00000530836 DGLUCYQ7Z3D6 616 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 ANKRD46Q86W74 232 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 TNIP2Q8NFZ5 429 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 FCRL4Q96PJ5 515 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 ECSITQ9BQ95 431 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 CCDC3Q9BQI4 270 aa20.11■□□□□ 0.81
VPS28-212ENST00000530836 DUX1O43812 170 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 SMIM10L1P0DMW3 83 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 ALDH4A1P30038 563 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 PPM1FP49593 454 aaPredicted RBP20.1■□□□□ 0.81
VPS28-212ENST00000530836 PPP1CAP62136 330 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 PLIN5Q00G26 463 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 LIPEQ05469 1076 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 ZNF793Q6ZN11 406 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 TICAM1Q8IUC6 712 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 PLXDC1Q8IUK5 500 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 ENDOVQ8N8Q3 282 aaKnown RBP20.1■□□□□ 0.81
VPS28-212ENST00000530836 UTP15Q8TED0 518 aaKnown RBP20.1■□□□□ 0.81
VPS28-212ENST00000530836 SMIM10Q96HG1 83 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 PHF12Q96QT6 1004 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 KCTD14Q9BQ13 255 aaPredicted RBP20.1■□□□□ 0.81
VPS28-212ENST00000530836 THUMPD3Q9BV44 507 aaKnown RBP20.1■□□□□ 0.81
VPS28-212ENST00000530836 TRIM15Q9C019 465 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 KLHL25Q9H0H3 589 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 TAS2R7Q9NYW3 318 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 SLC25A37Q9NYZ2 338 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 GMEB1Q9Y692 573 aa20.1■□□□□ 0.81
VPS28-212ENST00000530836 EVPLLA8MZ36 301 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 PSMG1O95456 288 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 HOXB9P17482 250 aaPredicted RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 PPIBP23284 216 aaKnown RBP20.09■□□□□ 0.81
VPS28-212ENST00000530836 HTR1EP28566 365 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 PTPN6P29350 595 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 AP2B1P63010 937 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 MS4A2Q01362 244 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 MC1RQ01726 317 aa20.09■□□□□ 0.81
VPS28-212ENST00000530836 SLAMF1Q13291 335 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms