RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 UTP15Q8TED0 518 aaKnown RBP9.84□□□□□ -0.83
CPSF1-203ENST00000527916 CREB3L4Q8TEY5 395 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 NANOS1Q8WY41 292 aaKnown RBP9.84□□□□□ -0.83
CPSF1-203ENST00000527916 TMEM125Q96AQ2 219 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 PEX11GQ96HA9 241 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 UBXN10Q96LJ8 280 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 LPAR4Q99677 370 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 RBBP8Q99708 897 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 EGFL8Q99944 293 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 DPH5Q9H2P9 285 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 SPNS1Q9H2V7 528 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 EHD1Q9H4M9 534 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 MMP25Q9NPA2 562 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 GPRC5BQ9NZH0 403 aa9.84□□□□□ -0.83
CPSF1-203ENST00000527916 PHF3Q92576 2039 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 HRNRQ86YZ3 2850 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 A0A1B0GTH9 108 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 OR2W5A6NFC9 320 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 KLK8O60259 260 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 NME2P1O60361 137 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 NEURL1O76050 574 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 WDR47O94967 919 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 ZNF888P0CJ79 500 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 CCDC166P0CW27 439 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 STMN1P16949 149 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 NME2P22392 152 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 ADSLP30566 484 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 HPDP32754 393 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 PTGER1P34995 402 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 SPRP35270 261 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 GPX6P59796 221 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 STXBP1P61764 594 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 MRPS25P82663 173 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 ACTN3Q08043 901 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 C2orf54Q08AI8 447 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 USP10Q14694 798 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 ABRAXAS2Q15018 415 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 RBBP5Q15291 538 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 RNFT1Q5M7Z0 435 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 SULT1C3Q6IMI6 304 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 TMIGD1Q6UXZ0 262 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 SLCO4C1Q6ZQN7 724 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 QSOX2Q6ZRP7 698 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 TMPRSS11BQ86T26 416 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 GPSM1Q86YR5 675 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 KRT78Q8N1N4 520 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 MARVELD2Q8N4S9 558 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 CPSF7Q8N684 471 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 OR5T3Q8NGG3 340 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 KIAA1191Q96A73 305 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 TSNARE1Q96NA8 513 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 NPLQ9BXD5 320 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 CLEC4MQ9H2X3 399 aaPredicted RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 CNOT10Q9H9A5 744 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 PTBP2Q9UKA9 531 aaKnown RBP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 PLEKHA6Q9Y2H5 1048 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.83□□□□□ -0.84
CPSF1-203ENST00000527916 ZNF407Q9C0G0 2248 aa9.83□□□□□ -0.84
CPSF1-203ENST00000527916 NBEAL1Q6ZS30 2694 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 FAM171A2A8MVW0 826 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 TAPBPO15533 448 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 PROM1O43490 865 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CDC40O60508 579 aaKnown RBP eCLIP9.82□□□□□ -0.84
CPSF1-203ENST00000527916 DNAJB6O75190 326 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CLEC3AO75596 197 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 PIAS1O75925 651 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 SERPIND1P05546 499 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 RNH1P13489 461 aaKnown RBP9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CD1DP15813 335 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 GDF5P43026 501 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 MAGEA4P43358 317 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CYB561P49447 251 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 ST13P50502 369 aaKnown RBP9.82□□□□□ -0.84
CPSF1-203ENST00000527916 PLTPP55058 493 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 OR4D2P58180 307 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 SLC26A5P58743 744 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 RAB10P61026 200 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 GUCY2DQ02846 1103 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 PMPCAQ10713 525 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 NAB1Q13506 487 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 E2F2Q14209 437 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 SFT2D3Q587I9 215 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 ARHGAP11AQ6P4F7 1023 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 PAPD4Q6PIY7 484 aaKnown RBP9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CLEC9AQ6UXN8 241 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 SYT10Q6XYQ8 523 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CAPN12Q6ZSI9 719 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 Q71RC1 249 aaPredicted RBP9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CCDC71Q8IV32 467 aaPredicted RBP9.82□□□□□ -0.84
CPSF1-203ENST00000527916 AMER2Q8N7J2 671 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 PDPRQ8NCN5 879 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 SPATA3Q8NHX4 192 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 FBXO25Q8TCJ0 367 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 ELP5Q8TE02 316 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 MBD6Q96DN6 1003 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 WDR34Q96EX3 536 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 C18orf12Q96KH6 178 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 KLHL31Q9H511 634 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 CAB39LQ9H9S4 337 aa9.82□□□□□ -0.84
CPSF1-203ENST00000527916 PRDM9Q9NQV7 894 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms