RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PTBP2Q9UKA9 531 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 RARRES3Q9UL19 164 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 PPIL1Q9Y3C6 166 aa7.55□□□□□ -1.2
LIMCH1-219ENST00000514096 KIR2DS5A0A0G2JLQ3 304 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 A0A0G2JND7 137 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 A0A0G2JNG1 304 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CENPBD1B2RD01 187 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 KIR2DS3K7RE56 304 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CDC7O00311 574 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 SAP18O00422 153 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 SCRG1O75711 98 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 IFNA16P05015 189 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF883P0CG24 379 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CDH1P12830 882 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF12P17014 697 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 BTF3P20290 206 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 PTPN7P35236 360 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 PTGIRP43119 386 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CCL11P51671 97 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CDKN2DP55273 166 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 KIR2DS5Q14953 304 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 AGERQ15109 404 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 GPR33Q49SQ1 333 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 GARNL3Q5VVW2 1013 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 METRNLQ641Q3 311 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ARSKQ6UWY0 536 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ANGPTL8Q6UXH0 198 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 BEND4Q6ZU67 534 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 KANSL1Q7Z3B3 1105 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 KCTD20Q7Z5Y7 419 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ARPINQ7Z6K5 226 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 PPP1R3BQ86XI6 285 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CILP2Q8IUL8 1156 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 RASGEF1CQ8N431 466 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF248Q8NDW4 579 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ULK4Q96C45 1275 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC46A1Q96NT5 459 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 PANX3Q96QZ0 392 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 THTPAQ9BU02 230 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 TRIM8Q9BZR9 551 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 SPRTNQ9H040 489 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CDYLQ9Y232 598 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 MTO1Q9Y2Z2 717 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CBY1Q9Y3M2 126 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ROS1P08922 2347 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 MAP1AP78559 2803 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 FAM95CA0A1B0GW59 222 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 FAM221BA6H8Z2 402 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 TPP1O14773 563 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 KPNA5O15131 536 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ST8SIA5O15466 376 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ARHGEF9O43307 516 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ZBTB14O43829 449 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 DLSTP36957 453 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 HTR2BP41595 481 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 PDX1P52945 283 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CASP6P55212 293 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ELOAQ14241 798 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CTSL3PQ5NE16 218 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 WASHC2DQ5SRD0 308 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 COL26A1Q96A83 441 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 INTS12Q96CB8 462 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 DPH7Q9BTV6 452 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 SOX17Q9H6I2 414 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ALG9Q9H6U8 611 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CRLF2Q9HC73 371 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ACTR10Q9NZ32 417 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ADGRE2Q9UHX3 823 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 PCDHB3Q9Y5E6 796 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 PCDHGB7Q9Y5F8 929 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CSNK1G3Q9Y6M4 447 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 ZFC3H1O60293 1989 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 MYLKQ15746 1914 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 CCDC88CQ9P219 2028 aa7.54□□□□□ -1.2
LIMCH1-219ENST00000514096 RIPK2O43353 540 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SMPD2O60906 423 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 IL1RNP18510 177 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 RPA3P35244 121 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 LSSP48449 732 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 PRLHRP49683 370 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 TAS2R39P59534 338 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 MAT1AQ00266 395 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 OCRLQ01968 901 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SYT16Q17RD7 645 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 IL23RQ5VWK5 629 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SHEQ5VZ18 495 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 TMEM71Q6P5X7 295 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 FBXO30Q8TB52 745 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 NRG4Q8WWG1 115 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 PYDC1Q8WXC3 89 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF514Q96K75 400 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SMAD5Q99717 465 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 TAS2R13Q9NYV9 303 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 ADAMTS6Q9UKP5 1117 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 CENPXA8MT69 81 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 SUPT3HB4E1H0 165 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 CCDC188H7C350 402 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 CATP04040 527 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 PGAM1P18669 254 aa7.53□□□□□ -1.2
LIMCH1-219ENST00000514096 TYK2P29597 1187 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms