RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZCCHC7Q8N3Z6 543 aaKnown RBP15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 AGAP11Q8TF27 550 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PTCHD1Q96NR3 888 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CSF3RQ99062 836 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TUBB6Q9BUF5 446 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MLXIPLQ9NP71 852 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MID1IP1Q9NPA3 183 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PRDM9Q9NQV7 894 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FARSBQ9NSD9 589 aaKnown RBP15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MMACHCQ9Y4U1 282 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SPACA6W5XKT8 324 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZFYVE26Q68DK2 2539 aa15.31■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 IGSF10Q6WRI0 2623 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 IGHV3-20A0A0C4DH32 117 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 H3BQF6 201 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 K7EM74 188 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MANBAO00462 879 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CYR61O00622 381 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CLDN4O14493 209 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 UBFD1O14562 309 aaKnown RBP15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 KLHL41O60662 606 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TRIM13O60858 407 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 C1QL1O75973 258 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SEC24DO94855 1032 aaPredicted RBP15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ESRRBO95718 433 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MYZAPP0CAP1 466 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MAOAP21397 527 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ALDH3A1P30838 453 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 Q0VFX4 171 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NFATC3Q12968 1075 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SLAMF1Q13291 335 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MYBPC3Q14896 1274 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TNFAIP8L3Q5GJ75 292 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TCHHL1Q5QJ38 904 aaPredicted RBP15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 VWA5B1Q5TIE3 1220 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 IRAK1BP1Q5VVH5 260 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ASB18Q6ZVZ8 466 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 EXOC3L1Q86VI1 746 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SCUBE1Q8IWY4 988 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 KBTBD2Q8IY47 623 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF595Q8IYB9 648 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TMEM52Q8NDY8 209 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 METTL6Q8TCB7 284 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZBTB9Q96C00 473 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PGM2Q96G03 612 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 THOC3Q96J01 351 aaKnown RBP15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MAPKAP1Q9BPZ7 522 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MECRQ9BV79 373 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF717Q9BY31 904 aaPredicted RBP15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 LHPPQ9H008 270 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 BRF2Q9HAW0 419 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SSU72Q9NP77 194 aaKnown RBP15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PRTFDC1Q9NRG1 225 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 KCMF1Q9P0J7 381 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 FBXW2Q9UKT8 454 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SLC12A4Q9UP95 1085 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF451Q9Y4E5 1061 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PCDHGB7Q9Y5F8 929 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ATMQ13315 3056 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CHD6Q8TD26 2715 aa15.3■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 IGKV3D-11A0A0A0MRZ8 115 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 TCRBV16S1A1N1A0A5B0 115 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CTIFO43310 598 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PDGFAP04085 211 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CPN2P22792 545 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 BSGP35613 385 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HNRNPFP52597 415 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HSD17B7P56937 341 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 OR4D2P58180 307 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ACTN3Q08043 901 aaPredicted RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CSTF3Q12996 717 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SFT2D3Q587I9 215 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PAPD4Q6PIY7 484 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NUDT13Q86X67 352 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF843Q8N446 348 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 EFCAB3Q8N7B9 438 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SMAD5Q99717 465 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 WDR77Q9BQA1 342 aaPredicted RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 GATA5Q9BWX5 397 aaPredicted RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MRPL1Q9BYD6 325 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ZNF552Q9H707 407 aaPredicted RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 DDX31Q9H8H2 851 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 NECTIN3Q9NQS3 549 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 LYARQ9NX58 379 aaKnown RBP15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 MS4A12Q9NXJ0 267 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 AHSPQ9NZD4 102 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PHF11Q9UIL8 331 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ACTL7BQ9Y614 415 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 CACNA1GO43497 2377 aa15.29■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 A0A0A6YYD5 115 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 BLACEA4D250 179 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ULK1O75385 1050 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 EEDO75530 441 aaKnown RBP15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ALPPP05187 535 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 SERPINA7P05543 415 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 PRR35P0CG20 571 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 ICAM2P13598 275 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HSD3B1P14060 373 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HSD3B2P26439 372 aa15.28■□□□□ 0.04
MSH5-SAPCD1-206ENST00000491552 HTR6P50406 440 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms