RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ATP12AP54707 1039 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RPL26P61254 145 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ALDH6A1Q02252 535 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 CDK18Q07002 472 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RAPSNQ13702 412 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 THOC5Q13769 683 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 DDX39BQ13838 428 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 DAG1Q14118 895 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RPS6KA2Q15349 733 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 MLANAQ16655 118 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 CA9Q16790 459 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RGS21Q2M5E4 152 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ZXDCQ2QGD7 858 aaPredicted RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 PLEKHN1Q494U1 663 aaPredicted RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ANKRD20A8PQ5CZ79 823 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 TMTC4Q5T4D3 741 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 HENMT1Q5T8I9 393 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 VWA5B1Q5TIE3 1220 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 KRT80Q6KB66 452 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 PPP1R2P3Q6NXS1 205 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 TRAT1Q6PIZ9 186 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 WASH2PQ6VEQ5 465 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ZC3H18Q86VM9 953 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RAB43Q86YS6 212 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 TMEM126BQ8IUX1 230 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ST13P4Q8IZP2 240 aaPredicted RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 TXLNBQ8N3L3 684 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ZCCHC7Q8N3Z6 543 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ATPAF2Q8N5M1 289 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RNF152Q8N8N0 203 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ADAMTS17Q8TE56 1095 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RNF141Q8WVD5 230 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 TM9SF4Q92544 642 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RSC1A1Q92681 617 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 HDAC11Q96DB2 347 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 CCDC120Q96HB5 630 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ZNF514Q96K75 400 aaPredicted RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 CEP19Q96LK0 163 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 LRFN5Q96NI6 719 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 IP6K3Q96PC2 410 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 CD180Q99467 661 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ZFYVE21Q9BQ24 234 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 AIFM2Q9BRQ8 373 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 NLNQ9BYT8 704 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 SHCBP1LQ9BZQ2 653 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 POLR1EQ9GZS1 481 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ILKAPQ9H0C8 392 aaPredicted RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 OR2AG1Q9H205 316 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 CHST8Q9H2A9 424 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 GANQ9H2C0 597 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 LRRC40Q9H9A6 602 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 AKIRIN1Q9H9L7 192 aaPredicted RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 SLC40A1Q9NP59 571 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 NT5MQ9NPB1 228 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 C8orf4Q9NR00 106 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 FAM207AQ9NSI2 230 aaPredicted RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 PARVAQ9NVD7 372 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 FAM53CQ9NYF3 392 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 SEMA5BQ9P283 1151 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ATXN10Q9UBB4 475 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 RPL26L1Q9UNX3 145 aaKnown RBP6.5□□□□□ -1.37
HDAC3-209ENST00000486618 LYVE1Q9Y5Y7 322 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 PSAT1Q9Y617 370 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 POMT1Q9Y6A1 747 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 APCP25054 2843 aa6.5□□□□□ -1.37
HDAC3-209ENST00000486618 ANKRD12Q6UB98 2062 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 TRAV34A0A0B4J273 112 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 IGHV5-51A0A0C4DH38 117 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 UBA6A0AVT1 1052 aaPredicted RBP6.49□□□□□ -1.37
HDAC3-209ENST00000486618 CCDC162PA2VCL2 907 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 SH3D21A4FU49 640 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 C5orf51A6NDU8 294 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 GOLGA6L9A6NEM1 432 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 FADS2P1A8MWK0 482 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 E9PI62 339 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 CHUKO15111 745 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 ADAM20O43506 726 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 FAM155BO75949 473 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 IGHEP01854 428 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 GLAP06280 429 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 EBLN1P0CF75 366 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 ZNF7P17097 686 aaPredicted RBP6.49□□□□□ -1.37
HDAC3-209ENST00000486618 ZNF8P17098 575 aaPredicted RBP6.49□□□□□ -1.37
HDAC3-209ENST00000486618 PCGF2P35227 344 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 CAPZA2P47755 286 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 GLRBP48167 497 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 SPINT3P49223 89 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 LMAN1P49257 510 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 CASP9P55211 416 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 JAM2P57087 298 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 UBE2HP62256 183 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 TUBB4BP68371 445 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 PRAMEP78395 509 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 HSD11B2P80365 405 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 OGDHQ02218 1023 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 TUBB2AQ13885 445 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 GPR18Q14330 331 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 KCNAB1Q14722 419 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 KRT31Q15323 416 aa6.49□□□□□ -1.37
HDAC3-209ENST00000486618 HSP90AA4PQ58FG1 418 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms