RNA–Protein interactions for RNA: ENST00000481641.1

CLK1-211, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 690 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-211ENST00000481641 MAGEA4P43358 317 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 MEOX1P50221 254 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 GPR143P51810 404 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 MTTPP55157 894 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 HSD17B7P56937 341 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 IRF8Q02556 426 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 SYT10Q6XYQ8 523 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 ZNF793Q6ZN11 406 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 RAPH1Q70E73 1250 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 CHERPQ8IWX8 916 aaKnown RBP17.3■□□□□ 0.36
CLK1-211ENST00000481641 ARMC10Q8N2F6 343 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 ZNF808Q8N4W9 903 aaPredicted RBP17.3■□□□□ 0.36
CLK1-211ENST00000481641 ADAMTS18Q8TE60 1221 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 TMEM125Q96AQ2 219 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 SEC16BQ96JE7 1060 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 CD244Q9BZW8 370 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 COPS7BQ9H9Q2 264 aaPredicted RBP17.3■□□□□ 0.36
CLK1-211ENST00000481641 PRM3Q9NNZ6 103 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 DAPP1Q9UN19 280 aa17.3■□□□□ 0.36
CLK1-211ENST00000481641 UTP11Q9Y3A2 253 aaKnown RBP17.3■□□□□ 0.36
CLK1-211ENST00000481641 NCOA6Q14686 2063 aaPredicted RBP17.29■□□□□ 0.36
CLK1-211ENST00000481641 A0A088AWK7 358 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 SUPT3HB4E1H0 165 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 UBXN8O00124 270 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 RTCAO00442 366 aaKnown RBP17.29■□□□□ 0.36
CLK1-211ENST00000481641 SUPT3HO75486 399 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 ITGA10O75578 1167 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 MLYCDO95822 493 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 IFNA16P05015 189 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 SNRPB2P08579 225 aaKnown RBP17.29■□□□□ 0.36
CLK1-211ENST00000481641 ZNF10P21506 573 aaPredicted RBP17.29■□□□□ 0.36
CLK1-211ENST00000481641 HTR1EP28566 365 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 PTGER1P34995 402 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 MSH2P43246 934 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 CDSNQ15517 529 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 Q6ZPB1 254 aaPredicted RBP17.29■□□□□ 0.36
CLK1-211ENST00000481641 MDGA2Q7Z553 956 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 FGD2Q7Z6J4 655 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 ISCA2Q86U28 154 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 SULF2Q8IWU5 870 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 ZNF595Q8IYB9 648 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 TMEM156Q8N614 296 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 MRRFQ96E11 262 aaKnown RBP17.29■□□□□ 0.36
CLK1-211ENST00000481641 VMP1Q96GC9 406 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 EFCAB11Q9BUY7 163 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 IGSF5Q9NSI5 407 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 KCMF1Q9P0J7 381 aa17.29■□□□□ 0.36
CLK1-211ENST00000481641 PPIEQ9UNP9 301 aaKnown RBP17.29■□□□□ 0.36
CLK1-211ENST00000481641 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.29■□□□□ 0.36
CLK1-211ENST00000481641 TMEM200CA6NKL6 621 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 SAP18O00422 153 aaKnown RBP17.28■□□□□ 0.36
CLK1-211ENST00000481641 PCNAP12004 261 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 ABOP16442 354 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 GPR85P60893 370 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 ID2Q02363 134 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 TERF2Q15554 542 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 HIST2H2ACQ16777 129 aaPredicted RBP17.28■□□□□ 0.36
CLK1-211ENST00000481641 HIST2H2AA3Q6FI13 130 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 MTFR2Q6P444 385 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 RPTNQ6XPR3 784 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 C3P1Q6ZMU1 363 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 BNC2Q6ZN30 1099 aaPredicted RBP17.28■□□□□ 0.36
CLK1-211ENST00000481641 LRRC70Q7Z2Q7 622 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 CYP4Z2PQ8N1L4 340 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 GHDCQ8N2G8 530 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 RNF175Q8N4F7 328 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 ZNF321PQ8N8H1 164 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 STAG3L4Q8TBR4 150 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 ZNF473Q8WTR7 871 aaKnown RBP17.28■□□□□ 0.36
CLK1-211ENST00000481641 NXNL1Q96CM4 212 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 ATOH8Q96SQ7 321 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 MAPKAP1Q9BPZ7 522 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 MS4A8Q9BY19 250 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 ALOXE3Q9BYJ1 711 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 ADAP2Q9NPF8 381 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 NUDT4Q9NZJ9 180 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 MRPS33Q9Y291 106 aaKnown RBP17.28■□□□□ 0.36
CLK1-211ENST00000481641 KLF2Q9Y5W3 355 aaPredicted RBP17.28■□□□□ 0.36
CLK1-211ENST00000481641 PKDREJQ9NTG1 2253 aa17.28■□□□□ 0.36
CLK1-211ENST00000481641 APCP25054 2843 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 ESYT3A0FGR9 886 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 CDK2AP1O14519 115 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 PEX1O43933 1283 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 CTNSO60931 367 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 LDB3O75112 727 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 TGFB1P01137 390 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 IRF9Q00978 393 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 SLC7A5Q01650 507 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 CAV1Q03135 178 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 LAPTM5Q13571 262 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 BMPR2Q13873 1038 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 TBCCQ15814 346 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 PAGE2BQ5JRK9 111 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 MCEMP1Q8IX19 187 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 PTPMT1Q8WUK0 201 aaPredicted RBP17.27■□□□□ 0.36
CLK1-211ENST00000481641 KCTD4Q8WVF5 259 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 PHF12Q96QT6 1004 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 CCDC77Q9BR77 488 aa17.27■□□□□ 0.36
CLK1-211ENST00000481641 SORBS1Q9BX66 1292 aaKnown RBP17.27■□□□□ 0.36
CLK1-211ENST00000481641 RAB17Q9H0T7 212 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms