RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 STAG3L4Q8TBR4 150 aa15.21■□□□□ 0.03
COL9A3-208ENST00000469802 EXT2Q93063 718 aa15.21■□□□□ 0.03
COL9A3-208ENST00000469802 VMP1Q96GC9 406 aa15.21■□□□□ 0.03
COL9A3-208ENST00000469802 DEFB126Q9BYW3 111 aa15.21■□□□□ 0.03
COL9A3-208ENST00000469802 TSPAN10Q9H1Z9 355 aaPredicted RBP15.21■□□□□ 0.03
COL9A3-208ENST00000469802 NMRAL1Q9HBL8 299 aa15.21■□□□□ 0.03
COL9A3-208ENST00000469802 ADAP2Q9NPF8 381 aa15.21■□□□□ 0.03
COL9A3-208ENST00000469802 SUCOQ9UBS9 1254 aaKnown RBP15.21■□□□□ 0.03
COL9A3-208ENST00000469802 MRPS33Q9Y291 106 aaKnown RBP15.21■□□□□ 0.03
COL9A3-208ENST00000469802 APCP25054 2843 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 HMX2A2RU54 273 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 CCL21O00585 134 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 CLDN4O14493 209 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 FCHO1O14526 889 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 CCNT2O60583 730 aaKnown RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 SCELO95171 688 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 S100BP04271 92 aaPredicted RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 LTA4HP09960 611 aaKnown RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 MTHFD2P13995 350 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 CRABP2P29373 138 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 IRF8Q02556 426 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 SLC13A2Q13183 592 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 ART3Q13508 389 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 MTFR2Q6P444 385 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 ZNF793Q6ZN11 406 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 UBE3DQ7Z6J8 389 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 CPSF7Q8N684 471 aaKnown RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 ZNF473Q8WTR7 871 aaKnown RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 KCNC2Q96PR1 638 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 F2RL3Q96RI0 385 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 COPS7BQ9H9Q2 264 aaPredicted RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 LYRM4Q9HD34 91 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 PNO1Q9NRX1 252 aaKnown RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 ZDHHC18Q9NUE0 388 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 KCMF1Q9P0J7 381 aa15.2■□□□□ 0.02
COL9A3-208ENST00000469802 KLF2Q9Y5W3 355 aaPredicted RBP15.2■□□□□ 0.02
COL9A3-208ENST00000469802 ESYT3A0FGR9 886 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 TMEM200CA6NKL6 621 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 NPIPA5E9PKD4 350 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 UBXN8O00124 270 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 ZNF24P17028 368 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 MSH2P43246 934 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 TGM3Q08188 693 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 ELAVL1Q15717 326 aaKnown RBP15.19■□□□□ 0.02
COL9A3-208ENST00000469802 C3AR1Q16581 482 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 MAPKAPK3Q16644 382 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 RPTNQ6XPR3 784 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 RAPH1Q70E73 1250 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 CCDC91Q7Z6B0 441 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 TBC1D1Q86TI0 1168 aaPredicted RBP15.19■□□□□ 0.02
COL9A3-208ENST00000469802 ZNF808Q8N4W9 903 aaPredicted RBP15.19■□□□□ 0.02
COL9A3-208ENST00000469802 NCLNQ969V3 563 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 MAGED4Q96JG8 741 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 TBCDQ9BTW9 1192 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 ROGDIQ9GZN7 287 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 TINAGQ9UJW2 476 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 NPIPA1Q9UND3 350 aa15.19■□□□□ 0.02
COL9A3-208ENST00000469802 CCDC189A1A4V9 331 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 SUPT3HB4E1H0 165 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 PRSS44E7EML9 344 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 K7EPI3 171 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 HNRNPRO43390 633 aaKnown RBP15.18■□□□□ 0.02
COL9A3-208ENST00000469802 ASNA1O43681 348 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 PRKNO60260 465 aaPredicted RBP15.18■□□□□ 0.02
COL9A3-208ENST00000469802 CTNSO60931 367 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 SUPT3HO75486 399 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 ITGA10O75578 1167 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 SERPINB1P30740 379 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 ADORA2A-AS1P86434 159 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 IRF9Q00978 393 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 RCN2Q14257 317 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 NAA30Q147X3 362 aaPredicted RBP15.18■□□□□ 0.02
COL9A3-208ENST00000469802 HIST2H2ACQ16777 129 aaPredicted RBP15.18■□□□□ 0.02
COL9A3-208ENST00000469802 HIST2H2AA3Q6FI13 130 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 BNC2Q6ZN30 1099 aaPredicted RBP15.18■□□□□ 0.02
COL9A3-208ENST00000469802 CLNKQ7Z7G1 428 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 MRGPRGQ86SM5 289 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 SPPL2CQ8IUH8 684 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 ACOT4Q8N9L9 421 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 POGLUT1Q8NBL1 392 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 SRFBP1Q8NEF9 429 aaKnown RBP15.18■□□□□ 0.02
COL9A3-208ENST00000469802 OR7G3Q8NG95 312 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 RHEBL1Q8TAI7 183 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 UBE2E3Q969T4 207 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 TMEM125Q96AQ2 219 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 NXNL1Q96CM4 212 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 OPTCQ9UBM4 332 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 SH3BGRL2Q9UJC5 107 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 KLF13Q9Y2Y9 288 aaPredicted RBP15.18■□□□□ 0.02
COL9A3-208ENST00000469802 ACOT9Q9Y305 439 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 TSC22D4Q9Y3Q8 395 aa15.18■□□□□ 0.02
COL9A3-208ENST00000469802 A0A087X1B8 175 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 KLK8O60259 260 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 HIST1H1TP22492 207 aaPredicted RBP15.17■□□□□ 0.02
COL9A3-208ENST00000469802 ATP5A1P25705 553 aaKnown RBP15.17■□□□□ 0.02
COL9A3-208ENST00000469802 CASP6P55212 293 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 SLC7A5Q01650 507 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 CKAP4Q07065 602 aaKnown RBP15.17■□□□□ 0.02
COL9A3-208ENST00000469802 BMPR2Q13873 1038 aa15.17■□□□□ 0.02
COL9A3-208ENST00000469802 SETDB1Q15047 1291 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms