RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FBXW2Q9UKT8 454 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 DAPP1Q9UN19 280 aa15.46■□□□□ 0.07
CCDC28B-204ENST00000469003 CYR61O00622 381 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 S100BP04271 92 aaPredicted RBP15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 TFEBP19484 476 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 CD22P20273 847 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 CERS1P27544 350 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 HTR1EP28566 365 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 PPP2R1BP30154 601 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 SPRP35270 261 aaPredicted RBP15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 SMSP52788 366 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 LIM2P55344 173 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 C2orf54Q08AI8 447 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 RCN2Q14257 317 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 NAA30Q147X3 362 aaPredicted RBP15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 TBCCQ15814 346 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 PAGE2BQ5JRK9 111 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 RNFT1Q5M7Z0 435 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 GRTP1Q5TC63 336 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 ADNP2Q6IQ32 1131 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 CTAGE3PQ8IX95 158 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 TMEM156Q8N614 296 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 NCLNQ969V3 563 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 CCDC77Q9BR77 488 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 COPS7BQ9H9Q2 264 aaPredicted RBP15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 RNF112Q9ULX5 631 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 MEMO1Q9Y316 297 aa15.45■□□□□ 0.06
CCDC28B-204ENST00000469003 APCP25054 2843 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 GTF3C1Q12789 2109 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 KLRC4-KLRK1H3BQV0 150 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CCNT2O60583 730 aaKnown RBP15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CTNSO60931 367 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 ITGA10O75578 1167 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 ABOP16442 354 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 EPORP19235 508 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CASP2P42575 452 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 KCNC1P48547 511 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 MEOX1P50221 254 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 IRF8Q02556 426 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CAV1Q03135 178 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CHIT1Q13231 466 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 E2F2Q14209 437 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 EFTUD2Q15029 972 aaKnown RBP eCLIP15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 ELAVL1Q15717 326 aaKnown RBP15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 HIST2H2ACQ16777 129 aaPredicted RBP15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 KBTBD12Q3ZCT8 623 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 HIST2H2AA3Q6FI13 130 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 LRRC70Q7Z2Q7 622 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CHERPQ8IWX8 916 aaKnown RBP15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 MCEMP1Q8IX19 187 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CYP4Z2PQ8N1L4 340 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 TMEM132CQ8N3T6 1108 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 SRFBP1Q8NEF9 429 aaKnown RBP15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 STAG3L4Q8TBR4 150 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 EXT2Q93063 718 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 F2RL3Q96RI0 385 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CSF3RQ99062 836 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 CD244Q9BZW8 370 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 ROGDIQ9GZN7 287 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 PRDM7Q9NQW5 492 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 NUDT4Q9NZJ9 180 aa15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 UTP11Q9Y3A2 253 aaKnown RBP15.44■□□□□ 0.06
CCDC28B-204ENST00000469003 ZFAND5O76080 213 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 MSH2P43246 934 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 PLTPP55058 493 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 HSF1Q00613 529 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 CLNKQ7Z7G1 428 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 SULF2Q8IWU5 870 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 PPM1NQ8N819 430 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 KCNC2Q96PR1 638 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 MS4A8Q9BY19 250 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 RAB17Q9H0T7 212 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 ALG9Q9H6U8 611 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 NMRAL1Q9HBL8 299 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 LYRM4Q9HD34 91 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 YARS2Q9Y2Z4 477 aaKnown RBP15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 ASB1Q9Y576 335 aa15.43■□□□□ 0.06
CCDC28B-204ENST00000469003 TFECO14948 347 aaPredicted RBP15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 PEX1O43933 1283 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 PRKNO60260 465 aaPredicted RBP15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 KERAO60938 352 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 FAM155BO75949 473 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 IFNA16P05015 189 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 SLC35E2BP0CK96 405 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 CRABP2P29373 138 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 STX2P32856 288 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 PTGER4P35408 488 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 GMPRP36959 345 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 MAGEA4P43358 317 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 SSR4P51571 173 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 DLG1Q12959 904 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 NAB1Q13506 487 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 SLMAPQ14BN4 828 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 RAPH1Q70E73 1250 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 UBE3DQ7Z6J8 389 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 CMC1Q7Z7K0 106 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 TBC1D1Q86TI0 1168 aaPredicted RBP15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 ISCA2Q86U28 154 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 CCDC25Q86WR0 208 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 DOLPP1Q86YN1 238 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms