RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CMPK1P30085 196 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 PTGER1P34995 402 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 PIGAP37287 484 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 SOX9P48436 509 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 CENPAP49450 140 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 BMXP51813 675 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 CRISP3P54108 245 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 PRR5P85299 388 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 VLDLRP98155 873 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 APOFQ13790 326 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 CLCA4Q14CN2 919 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 TAB1Q15750 504 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF57Q68EA5 555 aaPredicted RBP11.15□□□□□ -0.63
NPHP4-204ENST00000460696 DUS1LQ6P1R4 473 aaKnown RBP11.15□□□□□ -0.63
NPHP4-204ENST00000460696 CYHR1Q6ZMK1 362 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 ZSWIM9Q86XI8 627 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 CCDC116Q8IYX3 515 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 SLC15A4Q8N697 577 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF740Q8NDX6 193 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 OR9Q2Q8NGE9 314 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 WDR48Q8TAF3 677 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 FNDC8Q8TC99 324 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 FCGR1BQ92637 280 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 RERGQ96A58 199 aaPredicted RBP11.15□□□□□ -0.63
NPHP4-204ENST00000460696 C1QTNF3Q9BXJ4 246 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 HDHD2Q9H0R4 259 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 MARCH7Q9H992 704 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 MS4A12Q9NXJ0 267 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 MAT2BQ9NZL9 334 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 PTGFRNQ9P2B2 879 aa11.15□□□□□ -0.63
NPHP4-204ENST00000460696 TLX2O43763 284 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 KLK8O60259 260 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 APOL3O95236 402 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 VNN2O95498 520 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 CD247P20963 164 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TSTQ16762 297 aaKnown RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 METTL2BQ6P1Q9 378 aaKnown RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 UBE2J2Q8N2K1 259 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TCEANCQ8N8B7 351 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 OR4E2Q8NGC2 313 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 ENKURQ8TC29 256 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 C16orf78Q8WTQ4 265 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 RASSF5Q8WWW0 418 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TADA1Q96BN2 335 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 LMLNQ96KR4 655 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SFXN1Q9H9B4 322 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SLC25A37Q9NYZ2 338 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 RNF6Q9Y252 685 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SH3PXD2BA1X283 911 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SMIM30A4D0T7 59 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TLR4O00206 839 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 CH25HO95992 272 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 ADRB3P13945 408 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 NT5EP21589 574 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 RYKP34925 604 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TIAL1Q01085 375 aaKnown RBP eCLIP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SFSWAPQ12872 951 aaKnown RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TRAF7Q6Q0C0 670 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 ENPP7Q6UWV6 458 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SLC2A11Q9BYW1 496 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 POLE4Q9NR33 117 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 DNMT3BQ9UBC3 853 aaKnown RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 P2RX2Q9UBL9 471 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SBF1O95248 1867 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TET1Q8NFU7 2136 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 HEPACAM2A8MVW5 462 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 CAPN5O15484 640 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SRPRAP08240 638 aaKnown RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 OR12D1P0DN82 309 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 CEBPBP17676 345 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 TALDO1P37837 337 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 MTAPQ13126 283 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 UGT8Q16880 541 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 SMARCD3Q6STE5 483 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 VN1R5Q7Z5H4 357 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 OR52L1Q8NGH7 329 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 NECAB3Q96P71 396 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 UBE2ZQ9H832 354 aaPredicted RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 IL21Q9HBE4 155 aa11.14□□□□□ -0.63
NPHP4-204ENST00000460696 MRPS7Q9Y2R9 242 aaKnown RBP11.14□□□□□ -0.63
NPHP4-204ENST00000460696 PLXNA1Q9UIW2 1896 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 ASPDHA6ND91 283 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CASKO14936 926 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 ALDH3B2P48448 385 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 HBA1P69905 142 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 MRPL28Q13084 256 aaKnown RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CPZQ66K79 652 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 C6orf120Q7Z4R8 191 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 SERPINA11Q86U17 422 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 TSPYL5Q86VY4 417 aaPredicted RBP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.13□□□□□ -0.63
NPHP4-204ENST00000460696 ABHD11Q8NFV4 315 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 DOK4Q8TEW6 326 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 CAPSLQ8WWF8 208 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 FGF13Q92913 245 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 TESCQ96BS2 214 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 UCK2Q9BZX2 261 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 KCNK12Q9HB15 430 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 PALMDQ9NP74 551 aa11.13□□□□□ -0.63
NPHP4-204ENST00000460696 NDOR1Q9UHB4 597 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms