RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 GALNT11Q8NCW6 608 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 OR11H4Q8NGC9 324 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 NPLOC4Q8TAT6 608 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 TTC9Q92623 222 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 EIF3KQ9UBQ5 218 aaKnown RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 SEC14L4Q9UDX3 406 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 KLHL21Q9UJP4 597 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 TRAV6A0A075B6T7 132 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ATP6V1G2-DDX39BF2Z307 99 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 F5H5T6 163 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 K7ERQ8 282 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 GAPDHSO14556 408 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 DVL2O14641 736 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 NUPL2O15504 423 aaKnown RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 SLC22A5O76082 557 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ALDH1A1P00352 501 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF7P17097 686 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 DGKAP23743 735 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 NUDT1P36639 197 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ETV5P41161 510 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ETV1P50549 477 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF91Q05481 1191 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CRTC2Q53ET0 693 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 RNASE12Q5GAN4 147 aaKnown RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 DDI2Q5TDH0 399 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 GPR155Q7Z3F1 870 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CARNMT1Q8N4J0 409 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 OR4A15Q8NGL6 344 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 GATAD2BQ8WXI9 593 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 FATE1Q969F0 183 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 KATNB1Q9BVA0 655 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 DPCDQ9BVM2 203 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 TSSK6Q9BXA6 273 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 NMRK2Q9NPI5 230 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF222Q9UK12 451 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 MGAT4AQ9UM21 535 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 PRG3Q9Y2Y8 225 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 RWDD3Q9Y3V2 267 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 PRKAB1Q9Y478 270 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 IQCMA0A1B0GVH7 501 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 TRIM77I1YAP6 450 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CLDN7O95471 211 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 F11P03951 625 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CD22P20273 847 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 M6PRP20645 277 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 OPRD1P41143 372 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ABATP80404 500 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 LRRC74AQ0VAA2 488 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CHIT1Q13231 466 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 MAB21L1Q13394 359 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 FGFBP1Q14512 234 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 RPS26P11Q5JNZ5 115 aaPredicted RBP11.2□□□□□ -0.62
CPSF3-202ENST00000460593 ZBTB37Q5TC79 503 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 VRK3Q8IV63 474 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 TAGAPQ8N103 731 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 DNAJB8Q8NHS0 232 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CMTM7Q96FZ5 175 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 CHST8Q9H2A9 424 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 NIPAL2Q9H841 368 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 TVP23BQ9NYZ1 205 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 FNIP2Q9P278 1114 aa11.2□□□□□ -0.62
CPSF3-202ENST00000460593 KCNE1BA0A087WTH5 132 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 ZAR1LA6NP61 321 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SAP18O00422 153 aaKnown RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 PRRG1O14668 218 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 IGHA2P01877 340 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 ANXA5P08758 320 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 PRPS1L1P21108 318 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SOX18P35713 384 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 NNMTP40261 264 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 PRIM2P49643 509 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 YBEYP58557 167 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 MC1RQ01726 317 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 BCL2L1Q07817 233 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 MTAPQ13126 283 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SNAPC1Q16533 368 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF385BQ569K4 471 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 IER5LQ5T953 404 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 BCL2L15Q5TBC7 163 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 CEACAM20Q6UY09 585 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 RFLNAQ6ZTI6 216 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 PLEKHM3Q6ZWE6 761 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 PGBD3Q8N328 593 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 GDPD1Q8N9F7 314 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 C11orf65Q8NCR3 313 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF680Q8NEM1 530 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 CIDECQ96AQ7 238 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 TMEM80Q96HE8 168 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SMAD5Q99717 465 aaKnown RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SLC29A3Q9BZD2 475 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SLC32A1Q9H598 525 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 RBFOX1Q9NWB1 397 aaKnown RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 NDUFB11Q9NX14 153 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SCML2Q9UQR0 700 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 INMT-MINDY4F8WBC2 141 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 TEX46H3BTG2 121 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 LANCL1O43813 399 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 IRF1P10914 325 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 ICAM2P13598 275 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 INPP1P49441 399 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms