RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 LIPJQ5W064 366 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 MYLK4Q86YV6 388 aaPredicted RBP19.85■□□□□ 0.77
HMGB3-205ENST00000455596 PLD6Q8N2A8 252 aaKnown RBP19.85■□□□□ 0.77
HMGB3-205ENST00000455596 HORMAD2Q8N7B1 307 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 CMTM7Q96FZ5 175 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 CSF3RQ99062 836 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 ACTR8Q9H981 624 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 LYRM4Q9HD34 91 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 ZNF180Q9UJW8 692 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 PCDHGA11Q9Y5H2 935 aa19.85■□□□□ 0.77
HMGB3-205ENST00000455596 PRRC2CQ9Y520 2896 aaKnown RBP19.85■□□□□ 0.77
HMGB3-205ENST00000455596 CYR61O00622 381 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 UGDHO60701 494 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 SH3BGRLO75368 114 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 MYO1DO94832 1006 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 RBP1P09455 135 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 RNF224P0DH78 156 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 CD46P15529 392 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 ATP5A1P25705 553 aaKnown RBP19.84■□□□□ 0.77
HMGB3-205ENST00000455596 PIK3CGP48736 1102 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 ST13P50502 369 aaKnown RBP19.84■□□□□ 0.77
HMGB3-205ENST00000455596 CLCN2P51788 898 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 TDGF1P3P51864 188 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 DDX39BQ13838 428 aaKnown RBP19.84■□□□□ 0.77
HMGB3-205ENST00000455596 GTF2H2Q13888 395 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 TSNAXIP1Q2TAA8 658 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 AP5B1Q2VPB7 878 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 KHDRBS2Q5VWX1 349 aaKnown RBP19.84■□□□□ 0.77
HMGB3-205ENST00000455596 GTF2H2CQ6P1K8 395 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 METTL2BQ6P1Q9 378 aaKnown RBP19.84■□□□□ 0.77
HMGB3-205ENST00000455596 ZNF793Q6ZN11 406 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 UBE3DQ7Z6J8 389 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 CLNKQ7Z7G1 428 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 ACOT4Q8N9L9 421 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 B3GNT7Q8NFL0 401 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 UHMK1Q8TAS1 419 aaKnown RBP19.84■□□□□ 0.77
HMGB3-205ENST00000455596 DCAKDQ8WVC6 231 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 DEFB126Q9BYW3 111 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 ADAP2Q9NPF8 381 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 ZNF358Q9NW07 568 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 NFU1Q9UMS0 254 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 OSGIN2Q9Y236 505 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 CLDN16Q9Y5I7 305 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 SPACA6W5XKT8 324 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 HECTD1Q9ULT8 2610 aa19.84■□□□□ 0.77
HMGB3-205ENST00000455596 LRRC14BA6NHZ5 514 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 TGFBR3LH3BV60 316 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 RTCAO00442 366 aaKnown RBP19.83■□□□□ 0.77
HMGB3-205ENST00000455596 CTNSO60931 367 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 LDLRP01130 860 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 COL6A2P12110 1019 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 TPP2P29144 1249 aaPredicted RBP19.83■□□□□ 0.77
HMGB3-205ENST00000455596 PIK3CBP42338 1070 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 SSR2P43308 183 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 PHEXP78562 749 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 SPINK14Q6IE38 97 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 GOLGA7Q7Z5G4 137 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 IFT20Q8IY31 132 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 TMEM178AQ8NBL3 297 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 APCDD1LQ8NCL9 501 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 HUS1BQ8NHY5 278 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 REPS1Q96D71 796 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 SCMH1Q96GD3 660 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 SCYL1Q96KG9 808 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 CENPKQ9BS16 269 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 OR51B5Q9H339 312 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 IPPKQ9H8X2 491 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 KLHL1Q9NR64 748 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 KCMF1Q9P0J7 381 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 LRFN1Q9P244 771 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 TMCO1Q9UM00 188 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 TSC22D4Q9Y3Q8 395 aa19.83■□□□□ 0.77
HMGB3-205ENST00000455596 USP9XQ93008 2570 aaPredicted RBP19.83■□□□□ 0.76
HMGB3-205ENST00000455596 ICE1Q9Y2F5 2266 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 TRBV11-1A0A0K0K1C0 115 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 CYSRT1A8MQ03 144 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 TRIM49D1C9J1S8 452 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 SAP18O00422 153 aaKnown RBP19.82■□□□□ 0.76
HMGB3-205ENST00000455596 FCHO1O14526 889 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 SCELO95171 688 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 SIX3O95343 332 aaPredicted RBP19.82■□□□□ 0.76
HMGB3-205ENST00000455596 HIST1H1TP22492 207 aaPredicted RBP19.82■□□□□ 0.76
HMGB3-205ENST00000455596 EEF1DP29692 281 aaKnown RBP19.82■□□□□ 0.76
HMGB3-205ENST00000455596 PPP2R1BP30154 601 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 RAP1GDS1P52306 607 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 MLF1P58340 268 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 C4orf17Q53FE4 359 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 DEPDC1Q5TB30 811 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 PTGR2Q8N8N7 351 aaPredicted RBP19.82■□□□□ 0.76
HMGB3-205ENST00000455596 RGMAQ96B86 450 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 VMP1Q96GC9 406 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 MAPKAP1Q9BPZ7 522 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 DMRT3Q9NQL9 472 aa19.82■□□□□ 0.76
HMGB3-205ENST00000455596 PLEKHB1Q9UF11 243 aaPredicted RBP19.82■□□□□ 0.76
HMGB3-205ENST00000455596 PPIEQ9UNP9 301 aaKnown RBP19.82■□□□□ 0.76
HMGB3-205ENST00000455596 LRRK2Q5S007 2527 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 EXOC1LA0A1B0GW35 172 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 WIPF3A6NGB9 483 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 H0YIV9 168 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 NEURL1O76050 574 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms