RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	ACOT9	Q9Y305	439 aa		11.65	□□□□□ -0.54
CPSF4-208	ENST00000452047	DCHS2	Q6V1P9	2916 aa		11.65	□□□□□ -0.54
CPSF4-208	ENST00000452047		A0A087X1B8	175 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	TRBV11-1	A0A0K0K1C0	115 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	CCDC189	A1A4V9	331 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	CLDN4	O14493	209 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	NME2P1	O60361	137 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	SLC25A12	O75746	678 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	SCEL	O95171	688 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	ALDOA	P04075	364 aa	Known RBP	11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	C2	P06681	752 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	NME2	P22392	152 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	MSH2	P43246	934 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	CLCN2	P51788	898 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	SLC13A2	Q13183	592 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	NAA30	Q147X3	362 aa	Predicted RBP	11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	WHAMMP3	Q1A5X7	153 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	SLC25A25	Q6KCM7	469 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	RELL1	Q8IUW5	271 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	LURAP1L	Q8IV03	231 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	SIAH3	Q8IW03	269 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	OR7G3	Q8NG95	312 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	THAP3	Q8WTV1	239 aa	Predicted RBP	11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	KCNC2	Q96PR1	638 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	FUT8	Q9BYC5	575 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	DEFB126	Q9BYW3	111 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	ACSS3	Q9H6R3	686 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	COPS7B	Q9H9Q2	264 aa	Predicted RBP	11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	LYRM4	Q9HD34	91 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	ADAP2	Q9NPF8	381 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	PNO1	Q9NRX1	252 aa	Known RBP	11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	NINJ2	Q9NZG7	142 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	OPTC	Q9UBM4	332 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	MRPS33	Q9Y291	106 aa	Known RBP	11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	CACNA1D	Q01668	2161 aa		11.64	□□□□□ -0.55
CPSF4-208	ENST00000452047	NCOA6	Q14686	2063 aa	Predicted RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	APC	P25054	2843 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	SYNDIG1L	A6NDD5	238 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	SYCE1L	A8MT33	242 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	RTCA	O00442	366 aa	Known RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	FCHO1	O14526	889 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	KLK8	O60259	260 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	SLC19A2	O60779	497 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	URI1	O94763	535 aa	Predicted RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	ATP5A1	P25705	553 aa	Known RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	CA7	P43166	264 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	CYB561	P49447	251 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	HLCS	P50747	726 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	TGM3	Q08188	693 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	SETDB1	Q15047	1291 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	ELAVL1	Q15717	326 aa	Known RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	HIST2H2AC	Q16777	129 aa	Predicted RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	FAM83E	Q2M2I3	478 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	TMEM35A	Q53FP2	167 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	HIST2H2AA3	Q6FI13	130 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	GRHL2	Q6ISB3	625 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	MED27	Q6P2C8	311 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	CLNK	Q7Z7G1	428 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	NOA1	Q8NC60	698 aa	Known RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	SRFBP1	Q8NEF9	429 aa	Known RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	UBE2E3	Q969T4	207 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	NCLN	Q969V3	563 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	MRRF	Q96E11	262 aa	Known RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	VMP1	Q96GC9	406 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	GPR137	Q96N19	417 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	GPR78	Q96P69	363 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	TBCD	Q9BTW9	1192 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	DMGDH	Q9UI17	866 aa	Known RBP	11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047	FBN2	P35556	2912 aa		11.63	□□□□□ -0.55
CPSF4-208	ENST00000452047		A0A096LPK6	155 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	TRGV8	A0A0C4DH27	118 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	TMEM200C	A6NKL6	621 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	PRKN	O60260	465 aa	Predicted RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	CTNS	O60931	367 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	KLHL2	O95198	593 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	TGFB1	P01137	390 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	PCNA	P12004	261 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	EPB42	P16452	691 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	HIST1H1T	P22492	207 aa	Predicted RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	ECHS1	P30084	290 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	SERPINB1	P30740	379 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	PHB	P35232	272 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	MAGEA12	P43365	314 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	SERPINB8	P50452	374 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	ALDH18A1	P54886	795 aa	Known RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	ALDH6A1	Q02252	535 aa	Known RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	RBPJ	Q06330	500 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	RCN2	Q14257	317 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	ACAP2	Q15057	778 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	UAP1	Q16222	522 aa	Predicted RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	MAPKAPK3	Q16644	382 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	KRTCAP3	Q53RY4	240 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	RNFT1	Q5M7Z0	435 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	CHERP	Q8IWX8	916 aa	Known RBP	11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	RNF175	Q8N4F7	328 aa		11.62	□□□□□ -0.55
CPSF4-208	ENST00000452047	MMGT1	Q8N4V1	131 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms