RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 NFAM1Q8NET5 270 aaPredicted RBP14.28□□□□□ -0.12
CHD3-205ENST00000449744 ZNF473Q8WTR7 871 aaKnown RBP14.28□□□□□ -0.12
CHD3-205ENST00000449744 IFT81Q8WYA0 676 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 SCMH1Q96GD3 660 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 CCDC77Q9BR77 488 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 TBCDQ9BTW9 1192 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 MS4A8Q9BY19 250 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 HES7Q9BYE0 225 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 VPS11Q9H270 941 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 ACSS3Q9H6R3 686 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 PRDM7Q9NQW5 492 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 FBXW2Q9UKT8 454 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 IKBKGQ9Y6K9 419 aa14.28□□□□□ -0.12
CHD3-205ENST00000449744 POLEQ07864 2286 aa14.27□□□□□ -0.12
CHD3-205ENST00000449744 TRGV8A0A0C4DH27 118 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 SH3BGRLO75368 114 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 KLHL2O95198 593 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 CLDN1O95832 211 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 TGFB1P01137 390 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 IFNA16P05015 189 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 SP1P08047 785 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 INHBAP08476 426 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 CTAGE8P0CG41 777 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 HNRNPFP52597 415 aaKnown RBP14.27□□□□□ -0.13
CHD3-205ENST00000449744 MLF1P58340 268 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 ALDH6A1Q02252 535 aaKnown RBP14.27□□□□□ -0.13
CHD3-205ENST00000449744 STX4Q12846 297 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 E2F2Q14209 437 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 SETDB1Q15047 1291 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 PFKFB4Q16877 469 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 AP5B1Q2VPB7 878 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 GRHL2Q6ISB3 625 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 TAOK1Q7L7X3 1001 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 RELL1Q8IUW5 271 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 CTAGE4Q8IX94 777 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 LAS2Q8IYD9 372 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 TMEM132CQ8N3T6 1108 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 TMEM52Q8NDY8 209 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 TMEM125Q96AQ2 219 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 CMTM7Q96FZ5 175 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 VMP1Q96GC9 406 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 CSF3RQ99062 836 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 FMO2Q99518 471 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 CENPKQ9BS16 269 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 CDC42EP4Q9H3Q1 356 aaKnown RBP14.27□□□□□ -0.13
CHD3-205ENST00000449744 LYRM4Q9HD34 91 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 ADAP2Q9NPF8 381 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 ADGRE2Q9UHX3 823 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 DMGDHQ9UI17 866 aaKnown RBP14.27□□□□□ -0.13
CHD3-205ENST00000449744 ZGRF1Q86YA3 2104 aa14.27□□□□□ -0.13
CHD3-205ENST00000449744 PRRC2CQ9Y520 2896 aaKnown RBP14.27□□□□□ -0.13
CHD3-205ENST00000449744 HMX2A2RU54 273 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 CYR61O00622 381 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 CTNSO60931 367 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 SLC25A12O75746 678 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 NEURL1O76050 574 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 ACSL3O95573 720 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 TUBB4AP04350 444 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 MTHFD2P13995 350 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 TNNI3P19429 210 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 PPP2R1BP30154 601 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 SSR2P43308 183 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 RAP1GDS1P52306 607 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 ALDH18A1P54886 795 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 CASP6P55212 293 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 PHEXP78562 749 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 PCDH1Q08174 1060 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 DDX39BQ13838 428 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 NAA30Q147X3 362 aaPredicted RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 ELAVL1Q15717 326 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.26□□□□□ -0.13
CHD3-205ENST00000449744 GLE1Q53GS7 698 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 ZNF468Q5VIY5 522 aaPredicted RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 TMEM156Q8N614 296 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 ACOT4Q8N9L9 421 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 NOA1Q8NC60 698 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 APCDD1LQ8NCL9 501 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 OR7G3Q8NG95 312 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 THAP3Q8WTV1 239 aaPredicted RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 NCLNQ969V3 563 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 ACTR8Q9H981 624 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 CPSF2Q9P2I0 782 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 SUCOQ9UBS9 1254 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 TNPO3Q9Y5L0 923 aaKnown RBP14.26□□□□□ -0.13
CHD3-205ENST00000449744 CLCA3PQ9Y6N3 262 aa14.26□□□□□ -0.13
CHD3-205ENST00000449744 ASPDHA6ND91 283 aa14.25□□□□□ -0.13
CHD3-205ENST00000449744 TGFBR3LH3BV60 316 aa14.25□□□□□ -0.13
CHD3-205ENST00000449744 SAP18O00422 153 aaKnown RBP14.25□□□□□ -0.13
CHD3-205ENST00000449744 RTCAO00442 366 aaKnown RBP14.25□□□□□ -0.13
CHD3-205ENST00000449744 ZG16O60844 167 aa14.25□□□□□ -0.13
CHD3-205ENST00000449744 ZFAND5O76080 213 aa14.25□□□□□ -0.13
CHD3-205ENST00000449744 ALDOAP04075 364 aaKnown RBP14.25□□□□□ -0.13
CHD3-205ENST00000449744 HIST1H1TP22492 207 aaPredicted RBP14.25□□□□□ -0.13
CHD3-205ENST00000449744 CPN2P22792 545 aa14.25□□□□□ -0.13
CHD3-205ENST00000449744 ATP5A1P25705 553 aaKnown RBP14.25□□□□□ -0.13
CHD3-205ENST00000449744 COL8A1P27658 744 aa14.25□□□□□ -0.13
CHD3-205ENST00000449744 TRHRP34981 398 aaPredicted RBP14.25□□□□□ -0.13
CHD3-205ENST00000449744 PIK3CGP48736 1102 aa14.25□□□□□ -0.13
CHD3-205ENST00000449744 SERPINB9P50453 376 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms