RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ITGA10O75578 1167 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 IFNA16P05015 189 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 TNNI3P19429 210 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 PPP2R1BP30154 601 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 TLX1P31314 330 aaPredicted RBP6.6□□□□□ -1.35
VPS41-208ENST00000448833 GP5P40197 560 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 CASP2P42575 452 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 ARFIP1P53367 373 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 RAB10P61026 200 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SNRPNP63162 240 aaKnown RBP6.6□□□□□ -1.35
VPS41-208ENST00000448833 PMP22Q01453 160 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 IRF8Q02556 426 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 NAB1Q13506 487 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SLBPQ14493 270 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS41-208ENST00000448833 AP5B1Q2VPB7 878 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 ADPRMQ3LIE5 342 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 XKR6Q5GH73 641 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 GRTP1Q5TC63 336 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 NDUFAF5Q5TEU4 345 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 OPN5Q6U736 354 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 HSDL2Q6YN16 418 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 GK5Q6ZS86 529 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 C3orf62Q6ZUJ4 267 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 ACAD11Q709F0 780 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 DOLPP1Q86YN1 238 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SIAH3Q8IW03 269 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SULF2Q8IWU5 870 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SCUBE1Q8IWY4 988 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS41-208ENST00000448833 ZFP62Q8NB50 900 aaPredicted RBP6.6□□□□□ -1.35
VPS41-208ENST00000448833 APCDD1LQ8NCL9 501 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 PDPRQ8NCN5 879 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 OR8K3Q8NH51 312 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 OR14A16Q8NHC5 309 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 AGAP11Q8TF27 550 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 ASB5Q8WWX0 329 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 ASB15Q8WXK1 588 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 WNT2BQ93097 391 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 WDR34Q96EX3 536 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 PDLIM2Q96JY6 352 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SGCZQ96LD1 299 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 NPAS2Q99743 824 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 SPOCK3Q9BQ16 436 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 ERP44Q9BS26 406 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 TRIM51Q9BSJ1 452 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 TRIM31Q9BZY9 425 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 UNKQ9C0B0 810 aaKnown RBP6.6□□□□□ -1.35
VPS41-208ENST00000448833 RAB17Q9H0T7 212 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 TP63Q9H3D4 680 aaPredicted RBP6.6□□□□□ -1.35
VPS41-208ENST00000448833 KLHL31Q9H511 634 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 PLAC1Q9HBJ0 212 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 NECTIN3Q9NQS3 549 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 PNO1Q9NRX1 252 aaKnown RBP6.6□□□□□ -1.35
VPS41-208ENST00000448833 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS41-208ENST00000448833 HPF1Q9NWY4 346 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 CD274Q9NZQ7 290 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 MYOTQ9UBF9 498 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 COPS7AQ9UBW8 275 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 VTI1BQ9UEU0 232 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 TINAGQ9UJW2 476 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 RNF112Q9ULX5 631 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 DAPP1Q9UN19 280 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 UTP11Q9Y3A2 253 aaKnown RBP6.6□□□□□ -1.35
VPS41-208ENST00000448833 PSAT1Q9Y617 370 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 HCFC1P51610 2035 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 DNAJC13O75165 2243 aa6.6□□□□□ -1.35
VPS41-208ENST00000448833 OR14I1A6ND48 311 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 NCF1BA6NI72 391 aaPredicted RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 A8MUA0 341 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 NCF1CA8MVU1 366 aaPredicted RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 FAM47E-STBD1D6RA91 191 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 HOXD4P09016 255 aaPredicted RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 NCF1P14598 390 aaPredicted RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 CD1DP15813 335 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 CRABP2P29373 138 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 HNRNPH1P31943 449 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 STX2P32856 288 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 GDF5P43026 501 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 RPL21P46778 160 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 MEOX1P50221 254 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 PLA2G16P53816 162 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 LIM2P55344 173 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 PHEXP78562 749 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 PCDH1Q08174 1060 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 RUNX2Q13950 521 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 DOC2AQ14183 400 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 METTL2BQ6P1Q9 378 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 MED27Q6P2C8 311 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 ABHD17CQ6PCB6 329 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 CEP128Q6ZU80 1094 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 RAPH1Q70E73 1250 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 LRRC70Q7Z2Q7 622 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 TBC1D1Q86TI0 1168 aaPredicted RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 SLC22A16Q86VW1 577 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 CEP97Q8IW35 865 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 DND1Q8IYX4 353 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 KIF2BQ8N4N8 673 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 CPSF7Q8N684 471 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 SNX31Q8N9S9 440 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 GOLM1Q8NBJ4 401 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms