RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 MED26O95402 600 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 CSNK1EP49674 416 aaKnown RBP7.09□□□□□ -1.27
SYNE1-213ENST00000448038 SHC2P98077 582 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 MYBPC1Q00872 1141 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 ARMCX4Q5H9R4 360 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 TMEM107Q6UX40 140 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 AHSA2Q719I0 299 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 SLC22A15Q8IZD6 547 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 OR52E4Q8NGH9 312 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 RHBDD1Q8TEB9 315 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 SLC30A3Q99726 388 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 OSBPL10Q9BXB5 764 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 DMRT3Q9NQL9 472 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 PAPOLBQ9NRJ5 636 aaKnown RBP7.09□□□□□ -1.27
SYNE1-213ENST00000448038 MCM8Q9UJA3 840 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 IKZF2Q9UKS7 526 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 CASP8AP2Q9UKL3 1982 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 NUMA1Q14980 2115 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 GABRA3P34903 492 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 TPMTP51580 245 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 FADDQ13158 208 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 CCINQ13939 588 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 RPE65Q16518 533 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 GPR107Q5VW38 600 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 SLC30A6Q6NXT4 461 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.09□□□□□ -1.27
SYNE1-213ENST00000448038 DOK4Q8TEW6 326 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 KIAA1143Q96AT1 154 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-213ENST00000448038 SLC25A36Q96CQ1 311 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 S100A13Q99584 98 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 DDX28Q9NUL7 540 aaKnown RBP7.09□□□□□ -1.27
SYNE1-213ENST00000448038 HCN2Q9UL51 889 aa7.09□□□□□ -1.27
SYNE1-213ENST00000448038 HMGB3O15347 200 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 DLGAP3O95886 979 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 LINGO3P0C6S8 592 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 GIMD1P0DJR0 217 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 LAMP1P11279 417 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PORP16435 677 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 MRPS15P82914 257 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 CDKL1Q00532 357 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PCDH1Q08174 1060 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 TRIM16LQ309B1 348 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 NDUFAF5Q5TEU4 345 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 C6orf120Q7Z4R8 191 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 OAFQ86UD1 273 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SLC15A3Q8IY34 581 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 CLECL1Q8IZS7 167 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 DENND6BQ8NEG7 585 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 FAM174AQ8TBP5 190 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ZUFSPQ96AP4 578 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PKP2Q99959 881 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SERINC1Q9NRX5 453 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PTBP2Q9UKA9 531 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PCDHB3Q9Y5E6 796 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SIPA1L1O43166 1804 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 I6L893 689 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ST3GAL3Q11203 375 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ALKBH2Q6NS38 261 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 TRAF7Q6Q0C0 670 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 GALNT12Q8IXK2 581 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ZCCHC7Q8N3Z6 543 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 C19orf18Q8NEA5 215 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 OR4K17Q8NGC6 315 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SUN3Q8TAQ9 357 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ADAMTS19Q8TE59 1207 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 DAZLQ92904 295 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 RFKQ969G6 155 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 GFM1Q96RP9 751 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 OR51V1Q9H2C8 321 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 METTL7AQ9H8H3 244 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 MKL2Q9ULH7 1088 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 MMP17Q9ULZ9 603 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 MAU2Q9Y6X3 613 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 URB1O60287 2271 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 WDR90Q96KV7 1748 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PSMB5P28074 263 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 MRPL28Q13084 256 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 VMACQ2NL98 169 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SPANXN2Q5MJ10 180 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 TMPRSS11AQ6ZMR5 421 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 IL22RA1Q8N6P7 574 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 OR5K2Q8NHB8 316 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 MOSPD2Q8NHP6 518 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PELOQ9BRX2 385 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SLC35C2Q9NQQ7 365 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 EPHA6Q9UF33 1036 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SARDHQ9UL12 918 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 LTBP1Q14766 1721 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PNMA8CA0A1B0GUJ8 204 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 C2CD4DB7Z1M9 353 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SRFP11831 508 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 OR4D2P58180 307 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 NNATQ16517 81 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SMU1Q2TAY7 513 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 FLYWCH1Q4VC44 716 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PDZK1Q5T2W1 519 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 BHLHA9Q7RTU4 235 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 MINDY1Q8N5J2 469 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 AMER2Q8N7J2 671 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ZHX1-C8orf76Q96EF9 292 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms