RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 GOLGA8RI6L899 631 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 SAP18O00422 153 aaKnown RBP14.24□□□□□ -0.13
LIMS3-201ENST00000437679 RTCAO00442 366 aaKnown RBP14.24□□□□□ -0.13
LIMS3-201ENST00000437679 OR7A17O14581 309 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 SCELO95171 688 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 HIST1H1TP22492 207 aaPredicted RBP14.24□□□□□ -0.13
LIMS3-201ENST00000437679 PTX3P26022 381 aaPredicted RBP14.24□□□□□ -0.13
LIMS3-201ENST00000437679 TSFMP43897 325 aaKnown RBP14.24□□□□□ -0.13
LIMS3-201ENST00000437679 RPS13P62277 151 aaKnown RBP14.24□□□□□ -0.13
LIMS3-201ENST00000437679 ZRSR2Q15696 482 aaKnown RBP14.24□□□□□ -0.13
LIMS3-201ENST00000437679 MEP1AQ16819 746 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 OR4C11Q6IEV9 310 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 H3F3CQ6NXT2 135 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 ZNF793Q6ZN11 406 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 SCUBE1Q8IWY4 988 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 RNF175Q8N4F7 328 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 SLC5A8Q8N695 610 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 OR52B6Q8NGF0 335 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 OR1N1Q8NGS0 311 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 CDK15Q96Q40 435 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 NTMT1Q9BV86 223 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 RNF32Q9H0A6 362 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 PPCSQ9HAB8 311 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 TMEM216Q9P0N5 145 aa14.24□□□□□ -0.13
LIMS3-201ENST00000437679 TRAV17A0A0B4J275 112 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 BLACEA4D250 179 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 A8MT66 165 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 A8MUA0 341 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 CYR61O00622 381 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 ZNF500O60304 480 aaPredicted RBP14.23□□□□□ -0.13
LIMS3-201ENST00000437679 CTNSO60931 367 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 WDPCPO95876 746 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 F10P00742 488 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 GSTA1P08263 222 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 RPS17P08708 135 aaKnown RBP14.23□□□□□ -0.13
LIMS3-201ENST00000437679 SBK3P0C264 359 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 PYGBP11216 843 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 TNFSF10P50591 281 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 HNRNPFP52597 415 aaKnown RBP14.23□□□□□ -0.13
LIMS3-201ENST00000437679 ARFIP1P53367 373 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 ACER2Q5QJU3 275 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 FCRLBQ6BAA4 426 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 TTC19Q6DKK2 380 aaPredicted RBP14.23□□□□□ -0.13
LIMS3-201ENST00000437679 MILR1Q7Z6M3 343 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 TMEM151AQ8N4L1 468 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 TMEM52Q8NDY8 209 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 SUN3Q8TAQ9 357 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 C19orf60Q96EN9 201 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 NSUN5Q96P11 429 aaKnown RBP14.23□□□□□ -0.13
LIMS3-201ENST00000437679 CSF3RQ99062 836 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 MAPKAP1Q9BPZ7 522 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 ANKZF1Q9H8Y5 726 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 ZBTB26Q9HCK0 441 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 SEMA4BQ9NPR2 832 aaPredicted RBP14.23□□□□□ -0.13
LIMS3-201ENST00000437679 PNO1Q9NRX1 252 aaKnown RBP14.23□□□□□ -0.13
LIMS3-201ENST00000437679 AGPAT4Q9NRZ5 378 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 ASF1BQ9NVP2 202 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 PSD3Q9NYI0 1048 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 KCMF1Q9P0J7 381 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 DCDC2Q9UHG0 476 aa14.23□□□□□ -0.13
LIMS3-201ENST00000437679 OR5H15A6NDH6 313 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 FOXE1O00358 373 aaPredicted RBP14.22□□□□□ -0.13
LIMS3-201ENST00000437679 MYO1DO94832 1006 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 OTCP00480 354 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 SHBGP04278 402 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 GNLYP22749 145 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 CPN2P22792 545 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 SLCO1A2P46721 670 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 NEK2P51955 445 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 HERVK_113P63132 956 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 STX4Q12846 297 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 IFT88Q13099 833 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 TRAF3Q13114 568 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 SLAMF1Q13291 335 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 CUL3Q13618 768 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 TERF2Q15554 542 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 C10orf62Q5T681 223 aaPredicted RBP14.22□□□□□ -0.13
LIMS3-201ENST00000437679 FRG2Q64ET8 278 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 CLNKQ7Z7G1 428 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 CRLF3Q8IUI8 442 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 WDR20Q8TBZ3 569 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 ELP5Q8TE02 316 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 ZNF483Q8TF39 744 aaPredicted RBP14.22□□□□□ -0.13
LIMS3-201ENST00000437679 MZB1Q8WU39 189 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 MTFMTQ96DP5 389 aaKnown RBP14.22□□□□□ -0.13
LIMS3-201ENST00000437679 FRG2BQ96QU4 278 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 SORBS1Q9BX66 1292 aaKnown RBP14.22□□□□□ -0.13
LIMS3-201ENST00000437679 C1QTNF3Q9BXJ4 246 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 ERVK-6Q9BXR3 956 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 MS4A12Q9NXJ0 267 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 FBXW2Q9UKT8 454 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 SVILO95425 2214 aa14.22□□□□□ -0.13
LIMS3-201ENST00000437679 FLNCQ14315 2725 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 SMIM23A6NLE4 172 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 TCP11X1B4DZS4 312 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 PLPP1O14494 284 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 SLU7O95391 586 aaKnown RBP14.21□□□□□ -0.13
LIMS3-201ENST00000437679 IFNA16P05015 189 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 KRT15P19012 456 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 ATP5F1P24539 256 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms