RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 SRRM3A6NNA2 597 aaPredicted RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 FAM25EA8MYX2 175 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 CAPN9O14815 690 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 BIRC5O15392 142 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ST8SIA3O43173 380 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 PRPSAP2O60256 369 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 B3GALNT1O75752 331 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 BMP10O95393 424 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ACSL3O95573 720 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 CAVIN2O95810 425 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GLUD1P00367 558 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GM2AP17900 193 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 LMO1P25800 156 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 CORO1AP31146 461 aaKnown RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 CCT6AP40227 531 aaKnown RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GLUD2P49448 558 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 PEX5P50542 639 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 PGGT1BP53609 377 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SLC12A3P55017 1021 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ARPC4P59998 168 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SEC61A1P61619 476 aaKnown RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SP4Q02446 784 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 RUNX1T1Q06455 604 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 PPA1Q15181 289 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 IQCCQ4KMZ1 466 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SETMARQ53H47 684 aaPredicted RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 CMPK2Q5EBM0 449 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 N4BP2L1Q5TBK1 243 aaPredicted RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF852Q6ZMS4 543 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SLC9B2Q86UD5 537 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 PIM3Q86V86 326 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 AMIGO1Q86WK6 493 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 COMMD2Q86X83 199 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 DCP1BQ8IZD4 617 aaKnown RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 NANOGP1Q8N7R0 232 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 RASGEF1AQ8N9B8 481 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 L3MBTL4Q8NA19 623 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 KBTBD3Q8NAB2 608 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 HMGCLL1Q8TB92 370 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SLC26A7Q8TE54 656 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 CKAP2Q8WWK9 683 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 TAF4BQ92750 862 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 LRRC45Q96CN5 670 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 TAAR1Q96RJ0 339 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ATG101Q9BSB4 218 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 FUCA2Q9BTY2 467 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 PARD6BQ9BYG5 372 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 LSG1Q9H089 658 aaKnown RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ZBP1Q9H171 429 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 LRMDAQ9H2I8 198 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 ARRDC1-AS1Q9H2J1 176 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 RNF41Q9H4P4 317 aaPredicted RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 EBF2Q9HAK2 575 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 Q9N2K0 584 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 DNAJC4Q9NNZ3 241 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 NOX4Q9NPH5 578 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GSN-AS1Q9NRJ2 163 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SERINC1Q9NRX5 453 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 RGS18Q9NS28 235 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GKN1Q9NS71 199 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 POT1Q9NUX5 634 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 OSER1Q9NX31 292 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 IL20Q9NYY1 176 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 AKAP7Q9P0M2 348 aaPredicted RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 KLHL9Q9P2J3 617 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 LRWD1Q9UFC0 647 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 TUBGCP4Q9UGJ1 667 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SIX4Q9UIU6 781 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 RNF150Q9ULK6 438 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 PAIP2BQ9ULR5 123 aaKnown RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GPR132Q9UNW8 380 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 GINS2Q9Y248 185 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SPIN1Q9Y657 262 aaPredicted RBP3.81□□□□□ -1.8
HMGB3-203ENST00000430118 IKBKGQ9Y6K9 419 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 FANCMQ8IYD8 2048 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 OTOGLQ3ZCN5 2332 aa3.81□□□□□ -1.8
HMGB3-203ENST00000430118 SPEGQ15772 3267 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TTC3P53804 2025 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 LOXHD1Q8IVV2 1947 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TRBV2A0A0J9YWF9 115 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MBLAC1A4D2B0 266 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TRIM64CA6NLI5 447 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 INAFM1C9JVW0 142 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM178BH3BS89 294 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 O00370 1275 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MID1O15344 667 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 RNF113AO15541 343 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZNHIT1O43257 154 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CYTH3O43739 400 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MGRN1O60291 552 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 KCNJ13O60928 360 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CRCPO75575 148 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF189O75820 626 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 BCAS2O75934 225 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 AKAP3O75969 853 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 WISP2O76076 250 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 GLCEO94923 617 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CXCL14O95715 111 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 PLGP00747 810 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 POLR2MP0CAP2 368 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms