RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 NVLO15381 856 aaKnown RBP9.56□□□□□ -0.88
CD44-207ENST00000425428 HCRTR1O43613 425 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 DYRK3O43781 588 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 RDH16O75452 317 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 SLC22A3O75751 556 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 SCELO95171 688 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 BMP10O95393 424 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 GBAP04062 536 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 ATXN8OSP0DMR3 200 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 SMIM10L1P0DMW3 83 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 NR2F6P10588 404 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 G6PDP11413 515 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 BCKDHAP12694 445 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 COX7A2P14406 83 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 CLDN6P56747 220 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 RAB38P57729 211 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 RPS15P62841 145 aaKnown RBP9.56□□□□□ -0.88
CD44-207ENST00000425428 SRSF11Q05519 484 aaKnown RBP9.56□□□□□ -0.88
CD44-207ENST00000425428 PDCD4Q53EL6 469 aaKnown RBP9.56□□□□□ -0.88
CD44-207ENST00000425428 MAVSQ7Z434 540 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 OR51Q1Q8NH59 317 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 C16orf78Q8WTQ4 265 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 KIAA1143Q96AT1 154 aaPredicted RBP9.56□□□□□ -0.88
CD44-207ENST00000425428 MTERF3Q96E29 417 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 SMIM10Q96HG1 83 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 C10orf90Q96M02 699 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 TSSK3Q96PN8 268 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 OR1F2PQ96R84 312 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 KCNK13Q9HB14 408 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 MYNNQ9NPC7 610 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 C14orf105Q9NVL8 296 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 ZIM2Q9NZV7 527 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 HCN3Q9P1Z3 774 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 DAPP1Q9UN19 280 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 PCDHGB4Q9UN71 923 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 ENTPD4Q9Y227 616 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 DLGAP4Q9Y2H0 992 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 CCL27Q9Y4X3 112 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 MAU2Q9Y6X3 613 aa9.56□□□□□ -0.88
CD44-207ENST00000425428 DYTNA2CJ06 578 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 ZNF860A6NHJ4 632 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 CHST10O43529 356 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 EEDO75530 441 aaKnown RBP9.55□□□□□ -0.88
CD44-207ENST00000425428 ALBP02768 609 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 PRR35P0CG20 571 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 PIK3R1P27986 724 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 TPP2P29144 1249 aaPredicted RBP9.55□□□□□ -0.88
CD44-207ENST00000425428 XCR1P46094 333 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 LIM2P55344 173 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 CLDN8P56748 225 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 KLC1Q07866 573 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 LRRC74AQ0VAA2 488 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 STX4Q12846 297 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 SLC13A2Q13183 592 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 KIAA0040Q15053 153 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 NKAIN1Q4KMZ8 207 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 CPTPQ5TA50 214 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 MLIPQ5VWP3 458 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 OR52E8Q6IFG1 317 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 CGB2Q6NT52 195 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 MTDHQ86UE4 582 aaKnown RBP9.55□□□□□ -0.88
CD44-207ENST00000425428 ZNF595Q8IYB9 648 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 NLGN4XQ8N0W4 816 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 METTL27Q8N6F8 245 aaPredicted RBP9.55□□□□□ -0.88
CD44-207ENST00000425428 NLGN4YQ8NFZ3 816 aaPredicted RBP9.55□□□□□ -0.88
CD44-207ENST00000425428 ZFP28Q8NHY6 868 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 METTL21AQ8WXB1 218 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 TANKQ92844 425 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 FKBP10Q96AY3 582 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 TBC1D20Q96BZ9 403 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 MIEF2Q96C03 454 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 PPCDCQ96CD2 204 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 TUBB6Q9BUF5 446 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 EFHD1Q9BUP0 239 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 SORBS1Q9BX66 1292 aaKnown RBP9.55□□□□□ -0.88
CD44-207ENST00000425428 FAM117AQ9C073 453 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 REEP4Q9H6H4 257 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 RPF2Q9H7B2 306 aaKnown RBP9.55□□□□□ -0.88
CD44-207ENST00000425428 RMND5AQ9H871 391 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 PRDM9Q9NQV7 894 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 AIG1Q9NVV5 245 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 SH3BP4Q9P0V3 963 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 GIMAP2Q9UG22 337 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 PCDHGA7Q9Y5G6 932 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 CAPN7Q9Y6W3 813 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 AKAP10O43572 662 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 IL6P05231 212 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 IL3P08700 152 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 SDC1P18827 310 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 DDCP20711 480 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 NTSP30990 170 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 S100A3P33764 101 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 OR1D4P47884 311 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 TNFRSF17Q02223 184 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 MAP7Q14244 749 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 PGS1Q32NB8 556 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 MMEL1Q495T6 779 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 MINDY4Q4G0A6 757 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 AGKQ53H12 422 aa9.55□□□□□ -0.88
CD44-207ENST00000425428 NDUFAF5Q5TEU4 345 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms