RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ANKRD26P1Q6NSI1 321 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 SLC2A7Q6PXP3 512 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 ASRGL1Q7L266 308 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 TICAM1Q8IUC6 712 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 PGAM4Q8N0Y7 254 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 OR8J2Q8NGG1 315 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 DNAJB8Q8NHS0 232 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 FBXO27Q8NI29 283 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 BHLHE41Q9C0J9 482 aaPredicted RBP16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 SLC7A5P2Q9GIP4 190 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 FGF21Q9NSA1 209 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 GIMAP4Q9NUV9 329 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 NAALAD2Q9Y3Q0 740 aa16.24■□□□□ 0.19
CCDC28B-202ENST00000421922 ADAMTS20P59510 1910 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 C1orf226A1L170 272 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 ZNF860A6NHJ4 632 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 GABRR3A8MPY1 467 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 H0YHG0 523 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 NVLO15381 856 aaKnown RBP16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 B3GALT4O96024 378 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 NPPAP01160 153 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 SMIM10L1P0DMW3 83 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 NR2F6P10588 404 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 CPN2P22792 545 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 CSTF2P33240 577 aaKnown RBP eCLIP16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 GABRA4P48169 554 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 PLIN5Q00G26 463 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 MC1RQ01726 317 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 FOXM1Q08050 763 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 NDUFAF5Q5TEU4 345 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 TLDC1Q6P9B6 456 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 BNC2Q6ZN30 1099 aaPredicted RBP16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 ZNF574Q6ZN55 896 aaPredicted RBP16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 CAMKMTQ7Z624 323 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 RETREG3Q86VR2 466 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 NATD1Q8N6N6 113 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 AMER3Q8N944 861 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 SMIM10Q96HG1 83 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 ZNF285Q96NJ3 590 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 NDC1Q9BTX1 674 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 THTPAQ9BU02 230 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 PARD6AQ9NPB6 346 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 RXFP3Q9NSD7 469 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 TEX10Q9NXF1 929 aaPredicted RBP16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 MS4A12Q9NXJ0 267 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 AKAP7Q9P0M2 348 aaPredicted RBP16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 PDP2Q9P2J9 529 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 PCDHGB4Q9UN71 923 aa16.23■□□□□ 0.19
CCDC28B-202ENST00000421922 C15orf38-AP3S2A0A0A6YYH1 394 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 NTN3O00634 580 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 CASC3O15234 703 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 GALR3O60755 368 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 MSL3P1P0C860 447 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 LAMP1P11279 417 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 PIM1P11309 404 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 FOLR1P15328 257 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 NQO1P15559 274 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 NTSP30990 170 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 CPOXP36551 454 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ID4P47928 161 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 EMP3P54852 163 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 PSME3P61289 254 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 TNFRSF17Q02223 184 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ILKQ13418 452 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 TLR1Q15399 786 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 MRM1Q6IN84 353 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 TMPRSS9Q7Z410 1059 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ARHGAP22Q7Z5H3 698 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ARPINQ7Z6K5 226 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 DPP10Q8N608 796 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 RCBTB1Q8NDN9 531 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 NUDT8Q8WV74 236 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 HOPXQ9BPY8 73 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 NPLQ9BXD5 320 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 SPRTNQ9H040 489 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 MMADHCQ9H3L0 296 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 LYRM4Q9HD34 91 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 SLC52A3Q9NQ40 469 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ADA2Q9NZK5 511 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 EHD3Q9NZN3 535 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 NDOR1Q9UHB4 597 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 PSME2Q9UL46 239 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 PRPF19Q9UMS4 504 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ENTPD4Q9Y227 616 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 MRPS2Q9Y399 296 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ASB4Q9Y574 426 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 OTOGLQ3ZCN5 2332 aa16.22■□□□□ 0.19
CCDC28B-202ENST00000421922 ASPDHA6ND91 283 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 SGK494L7N484 410 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 RFXANKO14593 260 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 GSC2O15499 205 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 PDPK1O15530 556 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 RFPL3O75679 317 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 CIB2O75838 187 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 CPSF4O95639 269 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 AIFM1O95831 613 aa16.21■□□□□ 0.19
CCDC28B-202ENST00000421922 ARSFP54793 590 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms