RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 APMAPQ9HDC9 416 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ACSS2Q9NR19 701 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 A0A1W2PRB8 838 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 GNSP15586 552 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF43P17038 809 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SCNN1GP51170 649 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ST7LQ8TDW4 575 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ADAM2Q99965 735 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 DPYSL5Q9BPU6 564 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 TSSK6Q9BXA6 273 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 QPCTLQ9NXS2 382 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 A0A1W2PS29 197 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SMIM30A4D0T7 59 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 CBY3A6NI87 242 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 CEACAM20Q6UY09 585 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM156Q8N614 296 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 MAB21L3Q8N8X9 362 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 PYURFQ96I23 114 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ACBD6Q9BR61 282 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 C19orf25Q9UFG5 118 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 KIF13AQ9H1H9 1805 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 MT-CYBP00156 380 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 HTRA4P83105 476 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 MEDAGQ5VYS4 303 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 FSTL4Q6MZW2 842 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 PHF13Q86YI8 300 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ZBED3Q96IU2 234 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF230Q9UIE0 474 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 PI15O43692 258 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 TLR5O60602 858 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 ARHGAP19Q14CB8 494 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 AVL9Q8NBF6 648 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SIDT2Q8NBJ9 832 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 OR1S1Q8NH92 325 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 PDCD1LG2Q9BQ51 273 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC2A8Q9NY64 477 aa12.89□□□□□ -0.35
CCDC88A-204ENST00000413716 A0A087WUU8 490 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TNFSF12O43508 249 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CTDNEP1O95476 244 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ENGP17813 658 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 AQP2P41181 271 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TMPRSS12Q86WS5 348 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 P2RY11Q96G91 374 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SSU72Q9NP77 194 aaKnown RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ADRB3P13945 408 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 RAB6AP20340 208 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 HNF1BP35680 557 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 NUDT6P53370 316 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 AMZ1Q400G9 498 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 KIAA0319Q5VV43 1072 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 KCTD18Q6PI47 426 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ZSWIM9Q86XI8 627 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 NRROSQ86YC3 692 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SLAIN1Q8ND83 568 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 RBP7Q96R05 134 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CDC6Q99741 560 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ST14Q9Y5Y6 855 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 RFPL2O75678 378 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM155BO75949 473 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 H2BFMP0C1H6 154 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 UBE2G2P60604 165 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 PRAMEF18Q5VWM3 479 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 GPR142Q7Z601 462 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 UEVLDQ8IX04 471 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 HHATLQ9HCP6 504 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 COL20A1Q9P218 1284 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 KIAA0100Q14667 2235 aaKnown RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SSX9Q7RTT3 188 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 OR56A3Q8NH54 315 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 Q9N2J8 555 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ADAP2Q9NPF8 381 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TAS2R14Q9NYV8 317 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CD300AQ9UGN4 299 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CLIC1O00299 241 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 HEXBP07686 556 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 EPHA1P21709 976 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 UGCGQ16739 394 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TEX44Q53QW1 395 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 LYSMD3Q7Z3D4 306 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 PRELID2Q8N945 189 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SPRYD4Q8WW59 207 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 OR1E3Q8WZA6 343 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 C14orf119Q9NWQ9 140 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 PRKYO43930 277 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 EPHX1P07099 455 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 MRPS6P82932 125 aaKnown RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 DUOXA1Q1HG43 343 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 AWAT2Q6E213 333 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 NFKBIDQ8NI38 313 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF436Q9C0F3 470 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SPATC1LQ9H0A9 340 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 IQGAP3Q86VI3 1631 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ABCA9Q8IUA7 1624 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 PEX12O00623 359 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 PTH2RP49190 550 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CCNJQ5T5M9 372 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 COX15Q7KZN9 410 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TRAM1L1Q8N609 369 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms