RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 LGR4Q9BXB1 951 aa16.32■□□□□ 0.2
PTPRC-206ENST00000413409 PCBD2Q9H0N5 130 aa16.32■□□□□ 0.2
PTPRC-206ENST00000413409 RPF2Q9H7B2 306 aaKnown RBP16.32■□□□□ 0.2
PTPRC-206ENST00000413409 GORASP2Q9H8Y8 452 aa16.32■□□□□ 0.2
PTPRC-206ENST00000413409 SLC23A2Q9UGH3 650 aa16.32■□□□□ 0.2
PTPRC-206ENST00000413409 CIDEBQ9UHD4 219 aa16.32■□□□□ 0.2
PTPRC-206ENST00000413409 EME2A4GXA9 379 aaPredicted RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 MAGEB17A8MXT2 336 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 SCAMP2O15127 329 aaKnown RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 RNGTTO60942 597 aaKnown RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 GMNNO75496 209 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 SCELO95171 688 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 LYNP07948 512 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 SERPINB1P30740 379 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 RAE1P78406 368 aaKnown RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 CTBSQ01459 385 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 LRRC74AQ0VAA2 488 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 SGCGQ13326 291 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 UGT8Q16880 541 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 GLYATQ6IB77 296 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 TMEM154Q6P9G4 183 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 MICU2Q8IYU8 434 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 RNF175Q8N4F7 328 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 OR5AR1Q8NGP9 310 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 PPWD1Q96BP3 646 aaKnown RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 CENPNQ96H22 339 aaPredicted RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 GBP5Q96PP8 586 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 DUSP23Q9BVJ7 150 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 EBPLQ9BY08 206 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 TRIT1Q9H3H1 467 aaKnown RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 KAT8Q9H7Z6 458 aaKnown RBP16.31■□□□□ 0.2
PTPRC-206ENST00000413409 FZD3Q9NPG1 666 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 ADGRE2Q9UHX3 823 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 ACSL6Q9UKU0 697 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 AURKCQ9UQB9 309 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 SH2B3Q9UQQ2 575 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 SLC17A4Q9Y2C5 497 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 AP4B1Q9Y6B7 739 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 TRPM6Q9BX84 2022 aa16.31■□□□□ 0.2
PTPRC-206ENST00000413409 C2CD3Q4AC94 2353 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 A0A1W2PQU0 124 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 A6NHS1 94 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PRR19A6NJB7 356 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 ETHE1O95571 254 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 HOXC4P09017 264 aaPredicted RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 NCK1P16333 377 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 IGFALSP35858 605 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 CLDN2P57739 230 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 RPS13P62277 151 aaKnown RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 ABHD18Q0P651 414 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PDK3Q15120 406 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 ATP6AP1Q15904 470 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 CAPRIN2Q6IMN6 1127 aaKnown RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PPP4R4Q6NUP7 873 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 ZCCHC8Q6NZY4 707 aaKnown RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 DNAJC14Q6Y2X3 702 aaPredicted RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 FKBP9P1Q75LS8 142 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 KRT78Q8N1N4 520 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 C1orf52Q8N6N3 182 aaKnown RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 DENND6BQ8NEG7 585 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 SLC17A9Q9BYT1 436 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PITHD1Q9GZP4 211 aaPredicted RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 REXO4Q9GZR2 422 aaKnown RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PDP2Q9P2J9 529 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PLEKHB1Q9UF11 243 aaPredicted RBP16.3■□□□□ 0.2
PTPRC-206ENST00000413409 BTNL2Q9UIR0 455 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 USP22Q9UPT9 525 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PRKAB1Q9Y478 270 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 PCDHB14Q9Y5E9 798 aa16.3■□□□□ 0.2
PTPRC-206ENST00000413409 ELOVL7A1L3X0 281 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 TXNDC9O14530 226 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 RFXANKO14593 260 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 PLD2O14939 933 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 PCDH7O60245 1069 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 COX7A2P14406 83 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 RPL3P39023 403 aaKnown RBP16.29■□□□□ 0.2
PTPRC-206ENST00000413409 CASRP41180 1078 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 WNT3P56703 355 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 PGS1Q32NB8 556 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 GTDC1Q4AE62 458 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 CATSPEREQ5SY80 951 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 OR4F3Q6IEY1 312 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 B3GNT8Q7Z7M8 397 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 AMIGO2Q86SJ2 522 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 RAB42Q8N4Z0 105 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 SPDYE1Q8NFV5 336 aaPredicted RBP16.29■□□□□ 0.2
PTPRC-206ENST00000413409 SMPDL3AQ92484 453 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 SCARF2Q96GP6 870 aaPredicted RBP16.29■□□□□ 0.2
PTPRC-206ENST00000413409 REXO5Q96IC2 774 aaKnown RBP16.29■□□□□ 0.2
PTPRC-206ENST00000413409 EGLN2Q96KS0 407 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 C9orf16Q9BUW7 83 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 THUMPD3Q9BV44 507 aaKnown RBP16.29■□□□□ 0.2
PTPRC-206ENST00000413409 OSBPL11Q9BXB4 747 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 RAB11FIP5Q9BXF6 653 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 SEMA6AQ9H2E6 1030 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 IKZF5Q9H5V7 419 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 YY1AP1Q9H869 796 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 COQ10BQ9H8M1 238 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 WASH6PQ9NQA3 447 aa16.29■□□□□ 0.2
PTPRC-206ENST00000413409 EVA1BQ9NVM1 165 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms