RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 PRAF2O60831 178 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 METTL15P1P0C7V9 234 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 P2RX1P51575 399 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 TEX44Q53QW1 395 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 PAOXQ6QHF9 649 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 VASH1Q7L8A9 365 aaPredicted RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 FBXO16Q8IX29 292 aaPredicted RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 ULBP1Q9BZM6 244 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 F5H5P2 479 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 LCMT2O60294 686 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 CLDN11O75508 207 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 PTPN2P17706 415 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 RPS12P25398 132 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 PBX3P40426 434 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 TSFMP43897 325 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 PMPCAQ10713 525 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 POLE4Q9NR33 117 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 NDST3O95803 873 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 BLKP51451 505 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 GPR68Q15743 365 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 TAF9Q16594 264 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 ZFYVE16Q7Z3T8 1539 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 FBXO15Q8NCQ5 510 aaPredicted RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 OR2T33Q8NG76 320 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 OR56A3Q8NH54 315 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 SGIP1Q9BQI5 828 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 MKRN2Q9H000 416 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 CACNA1IQ9P0X4 2223 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 DFFBO76075 338 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 SGPP2Q8IWX5 399 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 LRRN4CLQ8ND94 238 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 C16orf78Q8WTQ4 265 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 LRCH3Q96II8 777 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 ZNF514Q96K75 400 aaPredicted RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 SENP8Q96LD8 212 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 FTHL17Q9BXU8 183 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 OR52A5Q9H2C5 316 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 SLC38A1Q9H2H9 487 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 B3GNT2Q9NY97 397 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 RFX5P48382 616 aaPredicted RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 RSU1Q15404 277 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 ODF4Q2M2E3 257 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 PDE12Q6L8Q7 609 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 UEVLDQ8IX04 471 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 TCTE3Q8IZS6 198 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 TMEM185AQ8NFB2 350 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 OR6Q1Q8NGQ2 317 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 SLC25A44Q96H78 314 aaPredicted RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 FEM1CQ96JP0 617 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 ASB4Q9Y574 426 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 ST14Q9Y5Y6 855 aa12.97□□□□□ -0.33
USP49-203ENST00000394253 MTCL1Q9Y4B5 1905 aaKnown RBP12.97□□□□□ -0.33
USP49-203ENST00000394253 IMPA2O14732 288 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 PCDH7O60245 1069 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 PTGER3P43115 390 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 GSTM4Q03013 218 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 ACSBG2Q5FVE4 666 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 TTLL10Q6ZVT0 673 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 ALDH16A1Q8IZ83 802 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 PIGBQ92521 554 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 SLC25A31Q9H0C2 315 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.96□□□□□ -0.332e-7■■□□□ 14.5
USP49-203ENST00000394253 QTRT2Q9H974 415 aaKnown RBP12.96□□□□□ -0.33
USP49-203ENST00000394253 DDX4Q9NQI0 724 aaKnown RBP12.96□□□□□ -0.33
USP49-203ENST00000394253 ITM2CQ9NQX7 267 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 DISP2A7MBM2 1401 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 NOXRED1Q6NXP6 359 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 RFWD3Q6PCD5 774 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 NIPA1Q7RTP0 329 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 PLA2G15Q8NCC3 412 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 NANPQ8TBE9 248 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 ZNF681Q96N22 645 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 NIPSNAP3BQ9BS92 247 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 TIMM22Q9Y584 194 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 GABARAPL2P60520 117 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 ANKRD22Q5VYY1 191 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 MBOAT1Q6ZNC8 495 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 BCL7BQ9BQE9 202 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 RPS10-NUDT3A0A1W2PQS6 291 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 A8MVM7 634 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 C6P13671 934 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 CCNOP22674 350 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 RPS10P46783 165 aaKnown RBP12.96□□□□□ -0.33
USP49-203ENST00000394253 PTH2RP49190 550 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 RPL23AP62750 156 aaKnown RBP12.96□□□□□ -0.33
USP49-203ENST00000394253 NOXA1Q86UR1 476 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 NAXEQ8NCW5 288 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 FAM151AQ8WW52 585 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 EBF2Q9HAK2 575 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 KLRF1Q9NZS2 232 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 KLHL9Q9P2J3 617 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 B3GALT1Q9Y5Z6 326 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 CEP290O15078 2479 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 NUDT1P36639 197 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 CEACAM20Q6UY09 585 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 BAGE3Q86Y29 109 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 BAGE2Q86Y30 109 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 TMEM125Q96AQ2 219 aa12.96□□□□□ -0.33
USP49-203ENST00000394253 MAGI2Q86UL8 1455 aa12.96□□□□□ -0.34
USP49-203ENST00000394253 RNF212BA8MTL3 300 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms