RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 HTR4Q13639 388 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 FAM214AQ32MH5 1076 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ZMAT1Q5H9K5 638 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 LRIF1Q5T3J3 769 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 C10orf62Q5T681 223 aaPredicted RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 ALG1LQ6GMV1 187 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ZNF367Q7RTV3 350 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 KRT73Q86Y46 540 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 C10orf111Q8N326 155 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 PGBD3Q8N328 593 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 OR10Q1Q8NGQ4 319 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 C9orf43Q8TAL5 461 aaPredicted RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 GIMAP5Q96F15 307 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 MYOCQ99972 504 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 MGME1Q9BQP7 344 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 CPPED1Q9BRF8 314 aaPredicted RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 C1QTNF7Q9BXJ2 289 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 BEX2Q9BXY8 128 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ASIC5Q9NY37 505 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 KIF17Q9P2E2 1029 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 TRMT6Q9UJA5 497 aaKnown RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 SAMHD1Q9Y3Z3 626 aaKnown RBP10.68□□□□□ -0.7
CUX1-204ENST00000393824 CCL27Q9Y4X3 112 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ARL5AQ9Y689 179 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ANKRD36A6QL64 1941 aa10.68□□□□□ -0.7
CUX1-204ENST00000393824 ATG2BQ96BY7 2078 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 NPEPPSL1A6NEC2 478 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 A8MX80 341 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 WNT9AO14904 365 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 SGTAO43765 313 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 CYP7B1O75881 506 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 STSP08842 583 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PSKH1P11801 424 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 NCF1P14598 390 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 CSTF2P33240 577 aaKnown RBP eCLIP10.67□□□□□ -0.72e-6■■■□□ 18.4
CUX1-204ENST00000393824 GJA4P35212 333 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 GGT2P36268 569 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 OPRD1P41143 372 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 IL2P60568 153 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.67□□□□□ -0.7
CUX1-204ENST00000393824 ZNF235Q14590 738 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PTGR1Q14914 329 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PTPRNQ16849 979 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 GTDC1Q4AE62 458 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 INO80DQ53TQ3 878 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 SPANXN4Q5MJ08 99 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PXDC1Q5TGL8 231 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 ZNF783Q6ZMS7 281 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 OR13C4Q8NGS5 318 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 GPR151Q8TDV0 419 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 OTUB2Q96DC9 234 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 GPR21Q99679 349 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 C17orf62Q9BQA9 187 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.67□□□□□ -0.79e-7■■□□□ 14.3
CUX1-204ENST00000393824 CLMPQ9H6B4 373 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 SIRT5Q9NXA8 310 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 GLTPQ9NZD2 209 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 TEKT2Q9UIF3 430 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 ASB1Q9Y576 335 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PCDHGC4Q9Y5F7 938 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 AUP1Q9Y679 476 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 KIF26AQ9ULI4 1882 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 UBA6A0AVT1 1052 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 LINC00862A6NCI5 91 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 NCF1BA6NI72 391 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 NCF1CA8MVU1 366 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 WASH3PC4AMC7 463 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 BNIP3LO60238 219 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 TSPAN12O95859 305 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PDGFAP04085 211 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 FABP3P05413 133 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 CCNYL3P0C7X3 344 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PIRTP0C851 137 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 SRCP12931 536 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 PKMP14618 531 aaKnown RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 SLC9A3P48764 834 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 ZNF140P52738 457 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 CRISP3P54108 245 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 RUNX3Q13761 415 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 GLYR1Q49A26 553 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 CACHD1Q5VU97 1274 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 LAMTOR1Q6IAA8 161 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 OR4F3Q6IEY1 312 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 KIAA0907Q7Z7F0 614 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 DCBLD1Q8N8Z6 715 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 ESAMQ96AP7 390 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 ELSPBP1Q96BH3 223 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 TMEM80Q96HE8 168 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 MRGPRX3Q96LB0 322 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 CDK15Q96Q40 435 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 CINPQ9BW66 212 aaPredicted RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 DPY30Q9C005 99 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 KCNH6Q9H252 994 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 TMEM245Q9H330 911 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 AMBNQ9NP70 447 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 SLC6A13Q9NSD5 602 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 CD274Q9NZQ7 290 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 EIF2B4Q9UI10 523 aaKnown RBP10.67□□□□□ -0.7
CUX1-204ENST00000393824 FAM50BQ9Y247 325 aa10.67□□□□□ -0.7
CUX1-204ENST00000393824 HCN4Q9Y3Q4 1203 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms