RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RNASET2O00584 256 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 NOBOXO60393 691 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 TBX19O60806 448 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 FURINP09958 794 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 DRD2P14416 443 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 IL1RNP18510 177 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 PEX19P40855 299 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 RXRGP48443 463 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 MAZP56270 477 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 OR4D2P58180 307 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 CYP4F3Q08477 520 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 SLC9A5Q14940 896 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 CEP68Q76N32 757 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 FAM20CQ8IXL6 584 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 TRIML2Q8N7C3 387 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 TSPAN14Q8NG11 270 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 OR2T12Q8NG77 320 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 BAHD1Q8TBE0 780 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 RSC1A1Q92681 617 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 MS4A6EQ96DS6 147 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 THUMPD3Q9BV44 507 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 ADI1Q9BV57 179 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 PAIP1Q9H074 479 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 ABCG4Q9H172 646 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 SEMA6CQ9H3T2 930 aa17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 CLK4Q9HAZ1 481 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-203ENST00000389856 ACOX3O15254 700 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 ERI3O43414 337 aaKnown RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 PRSS23O95084 383 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 EPN2O95208 641 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 TBX6O95947 436 aaPredicted RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 PROS1P07225 676 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 IL3P08700 152 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF23P17027 643 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 DDCP20711 480 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 CAPZBP47756 277 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 CHRNB3Q05901 458 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 MERTKQ12866 999 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 DYNC1I2Q13409 638 aaKnown RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 DEFB133Q30KQ1 61 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 RUNDC3AQ59EK9 446 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 TRIM73Q86UV7 250 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 EPHX4Q8IUS5 362 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 ZCCHC7Q8N3Z6 543 aaKnown RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 DTWD2Q8NBA8 298 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF583Q96ND8 569 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 RDH12Q96NR8 316 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 NECAB3Q96P71 396 aaPredicted RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 ELF4Q99607 663 aaPredicted RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 C17orf62Q9BQA9 187 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 CHID1Q9BWS9 393 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 SLC6A16Q9GZN6 736 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 SERHLQ9NQF3 203 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 LYARQ9NX58 379 aaKnown RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF282Q9UDV7 671 aaPredicted RBP17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 VPS4AQ9UN37 437 aa17.31■□□□□ 0.36
CCDC88C-203ENST00000389856 TRBV5-3A0A0A0MS03 114 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 H0YAE9 185 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 GSTA4O15217 222 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 CLOCKO15516 846 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 ZSCAN9O15535 394 aaPredicted RBP17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 ALPPL2P10696 532 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 LAMP1P11279 417 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 PPM1FP49593 454 aaPredicted RBP17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 PLA2G16P53816 162 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 SLC36A3Q495N2 470 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 PLK5Q496M5 336 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 ZC3H12BQ5HYM0 836 aaKnown RBP17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 C6orf132Q5T0Z8 1188 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 ABHD17CQ6PCB6 329 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 ABHD13Q7L211 337 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 SATL1Q86VE3 508 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 DTWD1Q8N5C7 304 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 ARL10Q8N8L6 244 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF717Q9BY31 904 aaPredicted RBP17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 OLAHQ9NV23 265 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 SMPD3Q9NY59 655 aaPredicted RBP17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 PTTG2Q9NZH5 202 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 VAPAQ9P0L0 249 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 PILRBQ9UKJ0 227 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 OAZ3Q9UMX2 235 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 KLHL20Q9Y2M5 609 aa17.3■□□□□ 0.36
CCDC88C-203ENST00000389856 A0A0A6YYD5 115 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 FAM220BPB1ANY3 271 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 BMP10O95393 424 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 PGM3O95394 542 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 HPRP00739 348 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 GBAP04062 536 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 RETP07949 1114 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 NCK1P16333 377 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CDH3P22223 829 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 PHC1P78364 1004 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 PLIN5Q00G26 463 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 SUZ12Q15022 739 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 FCRL6Q6DN72 434 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 DNAJC14Q6Y2X3 702 aaPredicted RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 RNF44Q7L0R7 432 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 ANKRD46Q86W74 232 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 DHRSXQ8N5I4 330 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CEP76Q8TAP6 659 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms