RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PRORSD1PA6NEY8 169 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 SCELO95171 688 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 CKMT1AP12532 417 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 GABRA4P48169 554 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 MPEG1Q2M385 716 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 MSRB3Q8IXL7 192 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 MAPKAP1Q9BPZ7 522 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 GMPR2Q9P2T1 348 aaKnown RBP25.43■■□□□ 1.66
MSX1-201ENST00000382723 NEUROG3Q9Y4Z2 214 aa25.43■■□□□ 1.66
MSX1-201ENST00000382723 A0A1W2PR48 441 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 ZNF860A6NHJ4 632 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 GLOD5A6NK44 160 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 ERN1O75460 977 aaKnown RBP25.42■■□□□ 1.66
MSX1-201ENST00000382723 ME2P23368 584 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 MTPNP58546 118 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 HSD11B2P80365 405 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 SF3A2Q15428 464 aaKnown RBP25.42■■□□□ 1.66
MSX1-201ENST00000382723 SAMD4BQ5PRF9 694 aaKnown RBP25.42■■□□□ 1.66
MSX1-201ENST00000382723 CYB5D1Q6P9G0 228 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 TMPRSS9Q7Z410 1059 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 NET1Q7Z628 596 aaPredicted RBP25.42■■□□□ 1.66
MSX1-201ENST00000382723 CARFQ8N187 725 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 SERINC2Q96SA4 455 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 FAIM2Q9BWQ8 316 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 LYARQ9NX58 379 aaKnown RBP25.42■■□□□ 1.66
MSX1-201ENST00000382723 ABCD2Q9UBJ2 740 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 POMPQ9Y244 141 aa25.42■■□□□ 1.66
MSX1-201ENST00000382723 A0A1W2PQM1 296 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 B3GALT2O43825 422 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 GUCY1B2O75343 617 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 ZNF10P21506 573 aaPredicted RBP25.41■■□□□ 1.66
MSX1-201ENST00000382723 ERFP50548 548 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 OLR1P78380 273 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 SELPLGQ14242 412 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 C6orf163Q5TEZ5 329 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 C18orf63Q68DL7 685 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 DNAJB8Q8NHS0 232 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 EXOSC8Q96B26 276 aaKnown RBP25.41■■□□□ 1.66
MSX1-201ENST00000382723 NAALAD2Q9Y3Q0 740 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 WASHC1A8K0Z3 465 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 RNASET2O00584 256 aaKnown RBP25.41■■□□□ 1.66
MSX1-201ENST00000382723 DNAJB6O75190 326 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 ABCB1P08183 1280 aaPredicted RBP25.41■■□□□ 1.66
MSX1-201ENST00000382723 LRIF1Q5T3J3 769 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 TMEM71Q6P5X7 295 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 ZNF621Q6ZSS3 439 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 PDSS2Q86YH6 399 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 C10orf67Q8IYJ2 551 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 FAM47BQ8NA70 645 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 AURKBQ96GD4 344 aaPredicted RBP25.41■■□□□ 1.66
MSX1-201ENST00000382723 CCDC115Q96NT0 180 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 ANKRD27Q96NW4 1050 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 GBP5Q96PP8 586 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 CHRNA10Q9GZZ6 450 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 LRRN3Q9H3W5 708 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 CD300AQ9UGN4 299 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 BTNL2Q9UIR0 455 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 ERVK-11Q9UQG0 969 aa25.41■■□□□ 1.66
MSX1-201ENST00000382723 C15orf38-AP3S2A0A0A6YYH1 394 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 TXNDC9O14530 226 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 NVLO15381 856 aaKnown RBP25.4■■□□□ 1.66
MSX1-201ENST00000382723 AIFM1O95831 613 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 RETP07949 1114 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 ZNF883P0CG24 379 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 DRD2P14416 443 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 PTPN6P29350 595 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 TRPC1P48995 793 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 RUNX2Q13950 521 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 PRTGQ2VWP7 1150 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 ZNF574Q6ZN55 896 aaPredicted RBP25.4■■□□□ 1.66
MSX1-201ENST00000382723 PRSS42Q7Z5A4 293 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 ARPINQ7Z6K5 226 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 OR4A15Q8NGL6 344 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 SLC22A7Q9Y694 548 aa25.4■■□□□ 1.66
MSX1-201ENST00000382723 PROM1O43490 865 aa25.39■■□□□ 1.66
MSX1-201ENST00000382723 ENTPD5O75356 428 aa25.39■■□□□ 1.66
MSX1-201ENST00000382723 CPNE6O95741 557 aa25.39■■□□□ 1.66
MSX1-201ENST00000382723 GRK6P43250 576 aa25.39■■□□□ 1.66
MSX1-201ENST00000382723 DUSP3P51452 185 aaPredicted RBP25.39■■□□□ 1.66
MSX1-201ENST00000382723 FBXW10Q5XX13 1052 aa25.39■■□□□ 1.66
MSX1-201ENST00000382723 THUMPD3Q9BV44 507 aaKnown RBP25.39■■□□□ 1.66
MSX1-201ENST00000382723 SPRTNQ9H040 489 aaPredicted RBP25.39■■□□□ 1.66
MSX1-201ENST00000382723 PIF1Q9H611 641 aa25.39■■□□□ 1.66
MSX1-201ENST00000382723 DNAAF2Q9NVR5 837 aaKnown RBP25.39■■□□□ 1.66
MSX1-201ENST00000382723 TRBV5-3A0A0A0MS03 114 aa25.39■■□□□ 1.65
MSX1-201ENST00000382723 PGRMC2O15173 223 aa25.39■■□□□ 1.65
MSX1-201ENST00000382723 C6orf47O95873 294 aa25.39■■□□□ 1.65
MSX1-201ENST00000382723 GPR19Q15760 415 aa25.39■■□□□ 1.65
MSX1-201ENST00000382723 RUNDC3AQ59EK9 446 aa25.39■■□□□ 1.65
MSX1-201ENST00000382723 SEMA5BQ9P283 1151 aa25.39■■□□□ 1.65
MSX1-201ENST00000382723 GPR179Q6PRD1 2367 aa25.38■■□□□ 1.65
MSX1-201ENST00000382723 ASXL3Q9C0F0 2248 aa25.38■■□□□ 1.65
MSX1-201ENST00000382723 A0A1W2PRB8 838 aa25.38■■□□□ 1.65
MSX1-201ENST00000382723 SGK494L7N484 410 aa25.38■■□□□ 1.65
MSX1-201ENST00000382723 GALR3O60755 368 aaPredicted RBP25.38■■□□□ 1.65
MSX1-201ENST00000382723 TBX19O60806 448 aa25.38■■□□□ 1.65
MSX1-201ENST00000382723 HOXB9P17482 250 aaPredicted RBP25.38■■□□□ 1.65
MSX1-201ENST00000382723 LIM2P55344 173 aa25.38■■□□□ 1.65
MSX1-201ENST00000382723 LIPEQ05469 1076 aa25.38■■□□□ 1.65
MSX1-201ENST00000382723 SQSTM1Q13501 440 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms