RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 YES1P07947 543 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZNF3P17036 446 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ITIH1P19827 911 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ARNTP27540 789 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 PIGAP37287 484 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 MAN2A2P49641 1150 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 CCBE1Q6UXH8 406 aaPredicted RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 C9orf43Q8TAL5 461 aaPredicted RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 SMG7Q92540 1137 aaKnown RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 FAM46AQ96IP4 442 aaKnown RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 FRMD6Q96NE9 622 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 FEVQ99581 238 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 DPP7Q9UHL4 492 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 SARDHQ9UL12 918 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 INSL5Q9Y5Q6 135 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 SIPA1L1O43166 1804 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 LY75O60449 1722 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 C2orf92A0A1B0GVN3 265 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ADH5P11766 374 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 HTR2BP41595 481 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 CD97P48960 835 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 PSMD4P55036 377 aaKnown RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 SPATC1Q76KD6 591 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 HDDC3Q8N4P3 179 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZNF557Q8N988 423 aaPredicted RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 KREMEN2Q8NCW0 462 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 OR4C6Q8NH72 309 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 MOSPD2Q8NHP6 518 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 TBC1D15Q8TC07 691 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZNF431Q8TF32 576 aaPredicted RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 MGME1Q9BQP7 344 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 GPN1Q9HCN4 374 aaPredicted RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZDHHC4Q9NPG8 344 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 SLC35C2Q9NQQ7 365 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 DCAF13Q9NV06 445 aaKnown RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZNF840PA6NDX5 716 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ITGAMP11215 1152 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 JUPP14923 745 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 TIA1P31483 386 aaKnown RBP eCLIP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 CLCNKAP51800 687 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 RAB15P59190 212 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZNF45Q02386 682 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 APOFQ13790 326 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 DOC2AQ14183 400 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 CATSPEREQ5SY80 951 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 REEP3Q6NUK4 255 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZNF627Q7L945 461 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 SPRED1Q7Z699 444 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 KLHDC9Q8NEP7 349 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 BPIFB1Q8TDL5 484 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 P2RY13Q9BPV8 354 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 ZCCHC3Q9NUD5 404 aaKnown RBP6.29□□□□□ -1.4
SMC1A-202ENST00000375340 IL37Q9NZH6 218 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 POU2F3Q9UKI9 436 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 CLCA3PQ9Y6N3 262 aa6.29□□□□□ -1.4
SMC1A-202ENST00000375340 NPIPB15A6NHN6 443 aaPredicted RBP6.28□□□□□ -1.4
SMC1A-202ENST00000375340 M0QZQ0 153 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 GPR4P46093 362 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 ARFIP1P53367 373 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 CDH11P55287 796 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 MAZP56270 477 aaKnown RBP6.28□□□□□ -1.4
SMC1A-202ENST00000375340 OLFML2AQ68BL7 652 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 FAM86B1Q8N7N1 296 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 TMEM145Q8NBT3 493 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 TSPEARQ8WU66 669 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 SECISBP2Q96T21 854 aaKnown RBP6.28□□□□□ -1.4
SMC1A-202ENST00000375340 SRMSQ9H3Y6 488 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 TAS2R9Q9NYW1 312 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 MYO16Q9Y6X6 1858 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 FAM47E-STBD1D6RA91 191 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 LIPJQ5W064 366 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 TOMM5Q8N4H5 51 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 TMEM175Q9BSA9 504 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 SYT17Q9BSW7 474 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 STOML2Q9UJZ1 356 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 HHLA1C9JL84 531 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 RTCAO00442 366 aaKnown RBP6.28□□□□□ -1.4
SMC1A-202ENST00000375340 SCN2BO60939 215 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 TSPAN9O75954 239 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 LAMP2P13473 410 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 DCTP40126 519 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 GALNT1Q10472 559 aaPredicted RBP6.28□□□□□ -1.4
SMC1A-202ENST00000375340 CRTC1Q6UUV9 634 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 VITQ6UXI7 678 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 PEX5LQ8IYB4 626 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 CPA6Q8N4T0 437 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 Q9Y3F1 56 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 ANXA2P2A6NMY6 339 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 E2F3O00716 465 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 AREL1O15033 823 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 ANXA2P07355 339 aaKnown RBP6.28□□□□□ -1.4
SMC1A-202ENST00000375340 IL7P13232 177 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 PGFP49763 221 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 GINS1Q14691 196 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 TOMM20Q15388 145 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 MICAQ29983 383 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 PRSS48Q7RTY5 328 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 DCAF4L2Q8NA75 395 aa6.28□□□□□ -1.4
SMC1A-202ENST00000375340 PAPD5Q8NDF8 572 aaKnown RBP6.28□□□□□ -1.4
SMC1A-202ENST00000375340 GRPEL2Q8TAA5 225 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms