RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CXCR2P25025 360 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 GJA4P35212 333 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 GGT2P36268 569 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 CCR8P51685 355 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 SVOPQ8N4V2 548 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 SLC15A4Q8N697 577 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 MIPOL1Q8TD10 442 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 GEMIN6Q8WXD5 167 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 DNASE1L2Q92874 299 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 PLEKHA8Q96JA3 519 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 PRAP1Q96NZ9 151 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 BCL7BQ9BQE9 202 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 TMEM106CQ9BVX2 250 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 TRPV4Q9HBA0 871 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 MBNL1Q9NR56 388 aaKnown RBP19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 OBP2AQ9NY56 170 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 RAB23Q9ULC3 237 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 ANGPT4Q9Y264 503 aa19.86■□□□□ 0.77
CCDC88B-203ENST00000359902 PLXND1Q9Y4D7 1925 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 COL4A3Q01955 1670 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 MID1O15344 667 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 MAGEB3O15480 346 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 XCR1P46094 333 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 DSTNP60981 165 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 CSNK2BP67870 215 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 RUNX3Q13761 415 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 AGBL4Q5VU57 503 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 VITQ6UXI7 678 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 Q6ZNX1 250 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 ARMC8Q8IUR7 673 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 SMPDL3AQ92484 453 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 ACER3Q9NUN7 267 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 GDE1Q9NZC3 331 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 SH3GLB1Q9Y371 365 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 TRPM6Q9BX84 2022 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 PFDN1O60925 122 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 KAT7O95251 611 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 GSSP48637 474 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 CLCNKAP51800 687 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 MVKQ03426 396 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 DUS1LQ6P1R4 473 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 AHSA2Q719I0 299 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 LGI4Q8N135 537 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 CHFRQ96EP1 664 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 NIPSNAP1Q9BPW8 284 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 TEX101Q9BY14 249 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 PCBD2Q9H0N5 130 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 SFXN1Q9H9B4 322 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 LHX9Q9NQ69 397 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 WBP11Q9Y2W2 641 aaKnown RBP19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 PCDHGA2Q9Y5H1 932 aa19.85■□□□□ 0.77
CCDC88B-203ENST00000359902 KMOO15229 486 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 CAPN5O15484 640 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 TBX19O60806 448 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 FUT4P22083 530 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 PSMB9P28065 219 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 WASP42768 502 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 REEP5Q00765 189 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 ADPRMQ3LIE5 342 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 OR5P2Q8WZ92 322 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 NEURL3Q96EH8 262 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 PDXPQ96GD0 296 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 PIP5K1AQ99755 562 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 POFUT2Q9Y2G5 429 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 OR1A2Q9Y585 309 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 CORINQ9Y5Q5 1042 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 RECKO95980 971 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 ALDH9A1P49189 494 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 ST13P50502 369 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 HMGA2P52926 109 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 DGCR6Q14129 220 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 SAXO2Q658L1 398 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 FAM109BQ6ICB4 259 aaPredicted RBP19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 CEACAM20Q6UY09 585 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 PAGE2Q7Z2X7 111 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 SLC30A8Q8IWU4 369 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 LINC01555Q8NAE3 123 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 TRUB1Q8WWH5 349 aaKnown RBP19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 SPATA7Q9P0W8 599 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 WDR37Q9Y2I8 494 aa19.84■□□□□ 0.77
CCDC88B-203ENST00000359902 TRBC2A0A5B9 178 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 PCDH17O14917 1159 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 SLC22A1O15245 554 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 TFPTP0C1Z6 253 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 SLC35G4P0C7Q5 338 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 LIMS1P48059 325 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 MANFP55145 182 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 RPS26P62854 115 aaKnown RBP19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 CST6Q15828 149 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 DUSP6Q16828 381 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 DUSP7Q16829 419 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 REEP3Q6NUK4 255 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 UBE2Q1Q7Z7E8 422 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 P3H2Q8IVL5 708 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 PARP8Q8N3A8 854 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 HORMAD2Q8N7B1 307 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 RHOXF1Q8NHV9 184 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 NT5DC2Q9H857 520 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 NECTIN3Q9NQS3 549 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms