RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 EFHD1Q9BUP0 239 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 WRAP53Q9BUR4 548 aaKnown RBP6.66□□□□□ -1.34
VPS13A-201ENST00000355766 LGR4Q9BXB1 951 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 CD244Q9BZW8 370 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 ZNF385DQ9H6B1 395 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 SARS2Q9NP81 518 aaKnown RBP6.66□□□□□ -1.34
VPS13A-201ENST00000355766 MBNL1Q9NR56 388 aaKnown RBP6.66□□□□□ -1.34
VPS13A-201ENST00000355766 RIC8BQ9NVN3 520 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 GPRC5BQ9NZH0 403 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 LRIT1Q9P2V4 623 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 OPTCQ9UBM4 332 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 KLQ9UEF7 1012 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 TRPS1Q9UHF7 1281 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 TAGLN3Q9UI15 199 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 CD84Q9UIB8 345 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 ZDHHC2Q9UIJ5 367 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 PILRAQ9UKJ1 303 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 SLC17A4Q9Y2C5 497 aa6.66□□□□□ -1.34
VPS13A-201ENST00000355766 SDK2Q58EX2 2172 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 IGHV5-10-1A0A0J9YXX1 117 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 A0A0U1RQS6 177 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 LOC101059948A0A1B0GTJ6 334 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 ZNF839A8K0R7 811 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 IQCF5A8MTL0 148 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 A8MX80 341 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 B4DGG1 531 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 C22orf46C9J442 243 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 SDHDO14521 159 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 KMOO15229 486 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 KDM1AO60341 852 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 CRCPO75575 148 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 LDLRP01130 860 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PRR35P0CG20 571 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 KITP10721 976 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 IDO1P14902 403 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PTPN4P29074 926 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 CA5AP35218 305 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 THBS2P35442 1172 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 CLCNKAP51800 687 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 SRP54P61011 504 aaKnown RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 NCALDP61601 193 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 HSPA14Q0VDF9 509 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 TRAF3Q13114 568 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 TRA2AQ13595 282 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 GTF2H2Q13888 395 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 BOP1Q14137 746 aaKnown RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 SQLEQ14534 574 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 NFATC4Q14934 902 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 NR1D2Q14995 579 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 IRF4Q15306 451 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 GSTA3Q16772 222 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PHKG1Q16816 387 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 WSCD2Q2TBF2 565 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 KHDC1Q4VXA5 237 aaKnown RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 GTF2H2CQ6P1K8 395 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 POMZP3Q6PJE2 187 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 RFLNAQ6ZTI6 216 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 UBE2R2Q712K3 238 aaPredicted RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 LRRTM4Q86VH4 590 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 DCUN1D3Q8IWE4 304 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 SFTPA2Q8IWL1 248 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 NLGN4XQ8N0W4 816 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PELI3Q8N2H9 469 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 NLGN4YQ8NFZ3 816 aaPredicted RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 RP9Q8TA86 221 aaKnown RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 KLHL29Q96CT2 875 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 NSL1Q96IY1 281 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 TEFMQ96QE5 360 aaKnown RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 EBF4Q9BQW3 602 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 HGH1Q9BTY7 390 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 CCDC106Q9BWC9 280 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 RAB11FIP5Q9BXF6 653 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 ASPSCR1Q9BZE9 553 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PITHD1Q9GZP4 211 aaPredicted RBP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PCBD2Q9H0N5 130 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 TMPRSS5Q9H3S3 457 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 EHD1Q9H4M9 534 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 MID1IP1Q9NPA3 183 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PNPOQ9NVS9 261 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS13A-201ENST00000355766 ARL15Q9NXU5 204 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 ASIC5Q9NY37 505 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 WWOXQ9NZC7 414 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 GALPQ9UBC7 116 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 IKZF3Q9UKT9 509 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 ACSL5Q9ULC5 683 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 PDE10AQ9Y233 779 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 TSC22D4Q9Y3Q8 395 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 DNAJC15Q9Y5T4 150 aa6.65□□□□□ -1.34
VPS13A-201ENST00000355766 DOCK9Q9BZ29 2069 aa6.65□□□□□ -1.35
VPS13A-201ENST00000355766 CRYBG3Q68DQ2 2970 aa6.65□□□□□ -1.35
VPS13A-201ENST00000355766 DNHD1Q96M86 4753 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TDRD6O60522 2096 aaKnown RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 BBIP1A8MTZ0 92 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 B4E171 279 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 CACNB4O00305 520 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 UBFD1O14562 309 aaKnown RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SORBS2O94875 1100 aaKnown RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SIX3O95343 332 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 KRT6AP02538 564 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms