RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MYO7BQ6PIF6 2116 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 GOLGA7Q7Z5G4 137 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 RPS19BP1Q86WX3 136 aaKnown RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 ZNF595Q8IYB9 648 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 SLC5A8Q8N695 610 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 BCORP1Q8N888 145 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 PTGR2Q8N8N7 351 aaPredicted RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 ACOT4Q8N9L9 421 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 HUS1BQ8NHY5 278 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 TRIM44Q96DX7 344 aaPredicted RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 MAPKAP1Q9BPZ7 522 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 SLX1AQ9BQ83 275 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 TBCDQ9BTW9 1192 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 SORBS1Q9BX66 1292 aaKnown RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 OR51B5Q9H339 312 aa17.19■□□□□ 0.34
CLN3-202ENST00000355477 COPS7BQ9H9Q2 264 aaPredicted RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 PNO1Q9NRX1 252 aaKnown RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 ERRFI1Q9UJM3 462 aaPredicted RBP17.19■□□□□ 0.34
CLN3-202ENST00000355477 MYOCOSA0A1B0GUC4 107 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 CLDN4O14493 209 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 MYO1DO94832 1006 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 CNTFP26441 200 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 TAS2R50P59544 299 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 DDX39BQ13838 428 aaKnown RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 ELOAQ14241 798 aaKnown RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 TMEM35AQ53FP2 167 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 ZNF766Q5HY98 468 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 DEPDC1Q5TB30 811 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 ZNF468Q5VIY5 522 aaPredicted RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 KHDRBS2Q5VWX1 349 aaKnown RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 LIPJQ5W064 366 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 SPINK14Q6IE38 97 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 CHSY3Q70JA7 882 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 TAOK1Q7L7X3 1001 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 CLNKQ7Z7G1 428 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 MYLK4Q86YV6 388 aaPredicted RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 APCDD1LQ8NCL9 501 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 MDS2Q8NDY4 140 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 SRFBP1Q8NEF9 429 aaKnown RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 SUN3Q8TAQ9 357 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 ADAMTS18Q8TE60 1221 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 SSC4DQ8WTU2 575 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 PHF21BQ96EK2 531 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 CMTM7Q96FZ5 175 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 MTERF1Q99551 399 aaKnown RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 UTP23Q9BRU9 249 aaKnown RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 HES7Q9BYE0 225 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 IPPKQ9H8X2 491 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 LYRM4Q9HD34 91 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 PRM3Q9NNZ6 103 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 OLAHQ9NV23 265 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 RNF11Q9Y3C5 154 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 TNPO3Q9Y5L0 923 aaKnown RBP17.18■□□□□ 0.34
CLN3-202ENST00000355477 EML6Q6ZMW3 1958 aa17.18■□□□□ 0.34
CLN3-202ENST00000355477 EXOC1LA0A1B0GW35 172 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 GABRR3A8MPY1 467 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 CTNSO60931 367 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 ABHD2P08910 425 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 RBP1P09455 135 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 COL6A2P12110 1019 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 HIST1H1TP22492 207 aaPredicted RBP17.17■□□□□ 0.34
CLN3-202ENST00000355477 EEF1DP29692 281 aaKnown RBP17.17■□□□□ 0.34
CLN3-202ENST00000355477 SERPINB1P30740 379 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 GPR143P51810 404 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 TDGF1P3P51864 188 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 MLF1P58340 268 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 PMP22Q01453 160 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 OR1C1Q15619 314 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 INAQ16352 499 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 AP5B1Q2VPB7 878 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 LGI4Q8N135 537 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 B3GNT7Q8NFL0 401 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 SCYL1Q96KG9 808 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 TXLNGYQ9BZA5 131 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 ROGDIQ9GZN7 287 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 ACTR8Q9H981 624 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 DMRT3Q9NQL9 472 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 ABI3Q9P2A4 366 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 XPR1Q9UBH6 696 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 MRPS33Q9Y291 106 aaKnown RBP17.17■□□□□ 0.34
CLN3-202ENST00000355477 TSC22D4Q9Y3Q8 395 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 GTF3C1Q12789 2109 aa17.17■□□□□ 0.34
CLN3-202ENST00000355477 H0YIV9 168 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 OR7A17O14581 309 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 RIPK2O43353 540 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 NEURL1O76050 574 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 WISP2O76076 250 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 SCELO95171 688 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 RASAL1O95294 804 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 SNRPAP09012 282 aaKnown RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 SBK3P0C264 359 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 MST1P26927 711 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 TPP2P29144 1249 aaPredicted RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 PIK3CBP42338 1070 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 RPS13P62277 151 aaKnown RBP17.16■□□□□ 0.34
CLN3-202ENST00000355477 TERF2Q15554 542 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 CPSF6Q16630 551 aaKnown RBP eCLIP17.16■□□□□ 0.34
CLN3-202ENST00000355477 TSNAXIP1Q2TAA8 658 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 OR4C11Q6IEV9 310 aa17.16■□□□□ 0.34
CLN3-202ENST00000355477 METTL2BQ6P1Q9 378 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms